Protein

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Genbank accession
WYD67227.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPSTDQIYQEFIAFKNSILRIKELTPLTNPEGTETLPAWSSKLQKEVQIPILSLIKASNGNIIDNGDRLILKAENNIDKDNVEQGDGVIALDSDGSIFFGTYINENEDQFDYLNTDAYTNGLVSDLQQATTKGAKTNKVIETAGYKKTGKTNADIPLLGGGDMPVASLATPEMVENRMPSGLKGETVFLSETGGKIYETGLIKEDFLIAENAEELAIAKTAPFDLQTIYNSWQRFSHANVNSTTPSPPIFPSFNDLEPLSSRLTPEEFYNNTAWNFDANNNRIFLTKNYGVFSGFVSPDKYTNYTLEIELSSTDIDDDQLGLVAAFYTDINTGYQYTISVIRSLNGISNNYTVWYNFGQIDGKLLFDGLSLAPSPSSVGWDVAGVTRLRIVRTGDSFSIKCSQFGSSTIDDSTEIILDLNSDTDLDKFKLGGQVGVAARSQKNAFFSDIKFTGFSQYIVNVLDENSQSYEIWKYNQSTSSYAVDAGIEIADILPQNRFLKSSLFSKWYYNFGNKLERVTDPTSGGLIDNYQLKSEKAQPNGYAPLDESALIPAAYLPSFIDDILDGKYVNATTFNDLSGDPYTGESGKIYVDTTSNLQYRWSGSAFVEVSSGGVNSVFGRTGIITAQQGDYSTFYPILSGSYNNPTWINQLAFSKLTSKPTTLSGYGITDANFLPLSGGNVTGNVNIAGRIGLGRTNPTARLDIQVEDSGSSGGIRLRGITTPTDTSYWSESQFAMQNAGVYRILLNSIGNSYINGGNLAVGKTNADHRLDVNGNAKADIFIGSGAQLTNIPQSAIVNLSDSLAAKVNVSGVQTINDTKTFSSSPVIPPPTLDSHAVNRGYLPLARNGTNTDSGIIINGRTTANYGNTPTRAIDLSYSNAAGSGNGATGVSSFAYGNNVKATGTNSFAGGNASQAGLNAFATGNICYALGSASFAVGSNTTANGDASAVIGSGLISNGWGEVGVGGYNEPGISGDVNTLTSKAFDVGVGTSNLNKKSAFTIFRNGAAKFYPIAKSTITNASAGMFISNSESSNRLEFYTGTRWVIVETTIPA
Physico‐chemical
properties
protein length:1052 AA
molecular weight: 112720,30350 Da
isoelectric point:4,69612
aromaticity:0,09981
hydropathy:-0,25019

Domains

Domains [InterPro]
DC_1887
STR
36–379
DC_1887 DC_2308 DC_1557
IPR011049
STR
845–1032
IPR011049
IPR011049
STR
876–969
IPR011049
WYD67227.1
1 1052
Architecture
STR
STR
STR
STR 36-379 | STR 455-595 | STR 748-1051 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYD67227.1
1 1052
Domain Start End Length (AA) Confidence
N-terminal 1 270 270 0,9692
Central domain 271 703 434 0,2370
C-terminal 704 1052 348 0,3622
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-270
Central
271-703
C-terminal
704-1052

Taxonomy

  Name Taxonomy ID Lineage
Phage Leeuwenhoekiella phage vB_LaeS_Arctus_1
[NCBI] 		3120034 Viruses >
Host Leeuwenhoekiella aequorea
[NCBI] 		283736 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYD67227.1 [NCBI]
Genbank nucleotide accession
PP314354.1 [NCBI]
CDS location
range 30526 -> 33684
strand +
CDS
ATGCCAAGCACAGACCAAATTTATCAGGAGTTCATAGCATTTAAGAACTCAATCTTAAGGATTAAAGAACTTACGCCTTTAACGAATCCTGAAGGTACAGAAACGCTTCCTGCGTGGAGTTCTAAACTTCAAAAAGAGGTTCAGATTCCTATTTTATCTTTGATTAAAGCCAGTAATGGCAACATCATTGATAACGGCGATAGGTTGATACTAAAAGCTGAAAACAACATTGATAAAGACAACGTTGAGCAAGGTGATGGTGTTATAGCTTTAGATAGTGACGGGAGTATATTTTTTGGTACTTATATAAATGAAAATGAAGATCAGTTTGACTATTTAAATACTGATGCATATACTAATGGGTTAGTTTCTGATTTACAGCAAGCAACCACCAAAGGAGCCAAGACAAATAAAGTAATTGAAACGGCCGGTTATAAGAAAACCGGTAAAACTAATGCGGATATTCCTTTGCTTGGAGGTGGCGATATGCCTGTCGCTAGTTTAGCTACTCCTGAAATGGTGGAAAACCGTATGCCATCAGGATTAAAGGGTGAAACAGTATTTTTAAGCGAAACAGGTGGTAAGATTTATGAAACAGGATTAATAAAAGAGGATTTTCTTATTGCTGAAAATGCAGAAGAGTTGGCAATCGCTAAAACAGCACCTTTCGATTTGCAAACAATATATAATAGTTGGCAAAGATTTAGTCACGCGAATGTAAATAGTACTACACCGTCACCGCCAATTTTCCCTTCTTTTAATGATTTAGAGCCGTTATCTTCCCGACTAACACCAGAAGAATTTTACAATAATACAGCGTGGAATTTTGATGCAAATAATAACAGGATATTTTTAACAAAAAATTACGGTGTATTCTCTGGTTTTGTAAGCCCTGATAAATACACTAATTATACTCTAGAAATAGAACTAAGTAGTACAGATATAGATGATGATCAATTAGGACTAGTAGCTGCCTTTTATACAGACATAAATACAGGTTATCAATATACTATTTCTGTTATAAGGTCATTGAACGGAATAAGTAACAATTATACTGTATGGTATAACTTCGGGCAAATTGACGGAAAATTACTTTTTGATGGTCTCAGTTTAGCTCCGTCACCATCTTCTGTAGGTTGGGATGTAGCGGGAGTTACAAGGTTAAGAATTGTAAGAACAGGTGACTCGTTTTCTATTAAATGTAGTCAGTTTGGAAGTTCAACAATAGACGATTCTACTGAAATAATACTAGATTTAAATAGCGATACAGATTTAGATAAATTTAAATTAGGTGGTCAGGTAGGTGTAGCGGCAAGAAGTCAAAAAAATGCGTTTTTCTCAGATATTAAATTTACAGGATTTAGTCAATATATAGTTAATGTATTGGATGAAAATTCTCAATCGTACGAAATATGGAAATACAATCAAAGCACATCTAGTTATGCGGTAGATGCTGGTATTGAAATTGCTGATATTTTACCTCAAAACAGATTTTTAAAATCTTCTTTATTTTCTAAATGGTATTACAATTTTGGTAATAAACTAGAAAGAGTTACAGATCCGACATCTGGTGGATTAATAGATAATTATCAATTAAAATCTGAAAAAGCTCAACCTAATGGTTACGCTCCATTAGATGAGTCCGCTCTAATACCAGCCGCTTACTTACCCTCTTTTATAGATGATATACTAGATGGTAAGTATGTTAATGCAACTACTTTTAATGATTTATCTGGCGATCCATATACTGGAGAATCTGGTAAAATATATGTAGACACTACAAGTAACCTACAATATAGGTGGAGTGGTTCTGCTTTTGTTGAAGTTAGTTCAGGAGGTGTTAATAGCGTGTTTGGGCGTACTGGAATAATAACGGCTCAACAAGGCGACTATTCTACTTTTTACCCTATTTTATCTGGAAGTTATAATAATCCTACTTGGATCAATCAATTAGCATTTTCTAAACTAACTTCTAAGCCTACCACATTAAGCGGTTACGGGATTACGGACGCTAATTTTTTACCATTATCAGGTGGCAATGTCACAGGTAATGTGAATATAGCTGGAAGAATAGGTTTAGGTAGAACAAATCCCACCGCTAGACTTGATATACAGGTTGAGGATTCTGGCAGTTCTGGTGGAATTAGACTACGAGGAATAACCACTCCTACCGATACTAGTTATTGGTCAGAGTCTCAATTTGCTATGCAAAATGCAGGTGTATATAGAATATTACTTAACAGTATAGGTAATAGCTACATTAACGGAGGGAATTTAGCTGTAGGAAAAACAAATGCAGATCATAGGCTGGATGTTAATGGGAATGCAAAAGCTGATATTTTTATAGGATCAGGCGCACAGTTAACAAACATCCCTCAAAGCGCAATAGTAAACTTGTCTGATTCATTAGCTGCAAAGGTTAATGTTAGCGGAGTTCAGACGATTAATGATACTAAAACATTCTCTTCAAGTCCAGTCATTCCTCCTCCTACTTTAGATAGTCACGCTGTTAATAGAGGGTATTTACCATTAGCTAGAAATGGCACAAATACGGATTCTGGTATCATAATCAACGGCAGAACAACGGCTAATTATGGTAATACACCTACAAGAGCAATTGACTTATCATATAGTAATGCGGCAGGATCTGGCAATGGTGCAACTGGAGTAAGTTCTTTTGCTTATGGTAACAATGTAAAGGCTACTGGAACTAACTCTTTTGCAGGTGGTAACGCATCTCAGGCAGGATTAAATGCTTTTGCAACGGGCAATATATGTTACGCTTTAGGCAGTGCTTCTTTTGCCGTAGGATCAAATACTACTGCTAACGGAGATGCATCAGCAGTTATTGGATCAGGGTTAATATCTAACGGATGGGGTGAAGTTGGTGTAGGTGGATATAATGAGCCGGGCATTAGTGGTGATGTAAACACACTTACTTCTAAAGCTTTTGATGTAGGGGTAGGTACATCTAATCTTAACAAAAAATCTGCATTTACAATTTTTAGAAATGGTGCAGCTAAATTTTACCCAATCGCAAAATCCACTATAACAAATGCTAGTGCCGGTATGTTTATAAGCAATTCTGAATCTAGTAATAGGCTCGAATTTTACACCGGTACAAGATGGGTGATAGTAGAAACAACAATACCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
66cac56e50767bdd1da5304b4519d30d8770bb3a322527ad83d647038e1934cd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6613
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral challenges and adaptations between Central Arctic Ocean and atmosphere Rahlff,J., Westmeijer,G., Weissenbach,J., Antson,A. and Holmfeldt,K. 2024 — GenBank