Protein

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Genbank accession
QIG60717.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MRVDNLQAETTITEQGERVYSPNNKPSASDIGALPATGKAANSAKADTAGQALYLEATDRRDVTPETAHTGRKKRVVRPFFVDNAAFPATNRPMGKYSDLLVMDTYSDATGGRVNGIVACKNSNALFHVQGEQDGEWTTSEKVYTTAQKPTAAEVGAHPNSWKPSWNDVSSKPAQATRWPKWGEISDKPGTMPPDTHTHPWSQITGIPSYATRWPKWSEVAGKPGNLLTQTTADTRYMSKNAKPDATTLDGIDSTGFSRAYSSNLSTGGGTWTTAQMVSWLKSQGAFKTMSWVCRCSWAYASNRILDTGHGKICFAGCVIEVIGRESNYTIRVTTPTTSSGGGTTNAEFIYVFNGDGYSPGWRRQYNSARKPTPGELGVYSKSESNSRFMDKNGGTFNGDLISSARNRGLFGTYDSRKTDQIWCMGTSWRNDASGNNFGTLYGLGYKHTNNPTGGTMAGGHQGVWCINGVPKAAMGEHGLWSAGQVYVSSKRYKCYHEGFRPSAKDIGAEPKLAADRKRKITYGTGNPTGGSDGDIYIQYK
Physico‐chemical
properties
protein length:541 AA
molecular weight: 58752,50290 Da
isoelectric point:9,26818
aromaticity:0,09982
hydropathy:-0,68817

Domains

Domains [InterPro]
DC_1209
STR
15–90
DC_1209 DC_1002 DC_1142
DC_0933
STR
255–405
DC_0933
QIG60717.1
1 541
Architecture
STR
STR
STR 15-90 | STR 98-537 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG60717.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9725
Central domain 49 247 200 0,1936
C-terminal 248 541 293 0,9199
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-48
Central
49-247
C-terminal
248-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPT02
[NCBI] 		2698726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG60717.1 [NCBI]
Genbank nucleotide accession
MN954399.1 [NCBI]
CDS location
range 85466 -> 87091
strand -
CDS
ATGCGCGTTGATAATTTACAAGCAGAAACAACTATAACAGAACAAGGGGAGAGAGTATACTCTCCCAATAATAAACCAAGTGCCTCAGATATTGGGGCACTCCCAGCCACTGGTAAGGCAGCTAACTCTGCAAAAGCAGATACTGCAGGTCAAGCACTATATTTAGAAGCTACTGACAGACGAGATGTTACTCCTGAGACTGCTCATACTGGTAGAAAGAAAAGAGTAGTACGACCTTTCTTTGTAGATAATGCCGCTTTTCCTGCAACTAATAGACCTATGGGAAAGTACTCAGACTTATTAGTTATGGATACATATAGTGATGCTACTGGGGGTAGAGTAAATGGTATTGTAGCATGTAAAAACTCTAATGCATTATTCCACGTACAGGGTGAGCAAGATGGAGAGTGGACTACTTCTGAAAAAGTATATACTACTGCCCAGAAGCCTACTGCAGCAGAAGTAGGGGCACACCCAAACTCATGGAAACCTTCATGGAATGATGTATCTAGCAAGCCAGCACAAGCTACACGTTGGCCAAAATGGGGTGAAATTAGTGATAAACCTGGTACTATGCCACCTGATACACATACACATCCATGGTCTCAAATAACAGGTATCCCTAGTTATGCTACACGCTGGCCGAAATGGAGTGAGGTAGCTGGTAAACCAGGTAACTTATTAACACAGACTACTGCTGATACTCGTTACATGAGTAAAAATGCTAAACCTGACGCTACTACATTGGACGGAATAGACTCTACGGGGTTTAGCAGGGCATACAGTAGTAATTTAAGTACAGGCGGGGGTACCTGGACAACAGCACAGATGGTTTCCTGGCTAAAATCCCAAGGCGCCTTTAAAACTATGTCATGGGTATGTAGATGTAGCTGGGCTTACGCTAGTAATAGAATATTGGATACTGGACATGGTAAGATATGTTTTGCTGGCTGTGTGATTGAAGTAATAGGTAGAGAAAGTAACTATACTATACGAGTTACAACTCCTACAACTTCATCTGGCGGAGGTACTACTAATGCTGAATTTATCTATGTATTCAATGGAGACGGATACTCTCCGGGATGGAGACGACAATACAACTCTGCTAGAAAACCTACTCCAGGTGAGTTAGGGGTGTACTCCAAATCAGAGAGTAATAGTCGTTTCATGGATAAAAACGGTGGTACTTTTAATGGAGATTTAATTTCTTCTGCTAGAAATAGGGGGCTATTTGGTACCTATGACTCTAGAAAAACGGATCAAATCTGGTGTATGGGTACTAGCTGGAGAAACGATGCTAGTGGTAATAACTTTGGTACTTTGTATGGTTTAGGATATAAACATACTAACAATCCTACAGGCGGTACTATGGCTGGAGGACACCAAGGGGTTTGGTGTATAAACGGGGTACCTAAGGCCGCTATGGGTGAACACGGGCTGTGGTCAGCTGGTCAGGTATATGTTAGCTCTAAAAGATATAAATGCTACCATGAAGGATTCAGACCTTCTGCTAAAGATATAGGGGCGGAGCCTAAACTAGCTGCGGATAGAAAACGTAAGATTACTTATGGTACTGGTAATCCTACAGGTGGGTCTGACGGCGATATTTACATTCAATACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b766989638c228a40e80102bb48d6b0bee6b0a4c9a1e03273d09a117f90e1be3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6807
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VpT02 Kim,B.S. and Kim,M. 2012-06-15 — GenBank