Protein

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Genbank accession
QFP93580.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,54
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLSTLPITANFNNRVFATYVDVADATNHVLVNTEDGQLVVLSEDFGTVLHTGTYPYLQASNANAIQTGTLRGDLYLANTQQAPTLVHGTTTQQDPTKTGFFFVRVPAFSKDYDITLSNSTGTYTYTHRTPNGQGGGDADLAKPSYVVSQLVSLINAETGTHGITAHAFDAYMYLVSTTATLSATTNAGSTYATASNQSRVALLSDLPARLPTIADGTLCAVGTTPRSFTWYEYESSTSVWKEAGAYGSPTGFSGMPIKLSLDGTYTVSTPEYEGRLAGSDITNEDPGFIEHGLTGFGVYQGRLVILAGPEVCMSASGRPERWYRSTVTSLLTDDPINVFSGAATTTNFSHCVQFNKDLLLFSRSCQAVVPSSNAAITPATAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTESFAGILEMIPSNTTDSQYTSNDVTAHIPRYMPGSIRSITASTTSNSSVLLCTGDDRSLFVQDYLWSGDEKVQSAWHQWGVPYPIVCAWFVRDRVYLGMRDGTSIVVGTIEPQAGTTYLSYTRPFSDLYSLVTVSGGLTTVPQHLRGAYLSGAELFLTFADTSKGGMWVGIDSVDTGTWQVQTVRNVPDGQYFLGVRYMSVLTPTPPLVRDANGVVIGTSRTLLVRYELTLKDSGEFHAVVADSSRVLTDGTYSSLVYSNVELLPDEPTSATLGRVVIPVRAQAQETVATFEADSDTDLCILDIEYVLQYRARRKRL
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84014,02450 Da
isoelectric point:5,20267
aromaticity:0,09278
hydropathy:-0,10412

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–775
IPR058003
QFP93580.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFP93580.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9864
Central domain 139 338 201 0,1306
C-terminal 339 776 437 0,1522
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-338
C-terminal
339-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage CX5
[NCBI] 		2652426 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kotilavirus
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFP93580.1 [NCBI]
Genbank nucleotide accession
MN270887 [NCBI]
CDS location
range 15565 -> 17895
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTGTCTCAGCAGGTTCCGCGTGAACGTCTGGACGGACAAGTCTCTGTTCAACTGAACCGTTTATCCGATGTGGTGAACGGGAACCGGCGTAGGCCGGGTGCTCGGTATTTGAGTACCCTACCAATCACAGCCAATTTCAATAACCGTGTGTTTGCTACGTACGTTGATGTGGCGGACGCTACCAACCATGTACTGGTGAACACAGAGGACGGGCAGCTGGTAGTTCTCTCAGAGGACTTTGGTACTGTACTGCATACCGGTACGTACCCGTATCTGCAAGCCAGTAATGCTAACGCTATCCAAACGGGTACACTTCGTGGTGACCTGTACTTAGCCAACACCCAGCAGGCTCCTACACTGGTGCACGGTACGACGACGCAACAGGACCCCACTAAGACCGGGTTCTTCTTTGTTCGAGTACCTGCATTCAGTAAAGACTACGACATTACATTATCAAACAGTACCGGCACGTACACGTACACCCACCGGACGCCTAATGGGCAGGGTGGTGGGGATGCTGACTTAGCAAAACCGTCGTACGTTGTCAGTCAACTAGTAAGCCTTATTAATGCAGAAACCGGTACACACGGCATTACGGCACACGCCTTTGATGCGTACATGTACTTGGTGAGCACTACCGCTACGTTATCAGCGACGACTAACGCAGGTTCCACTTACGCTACGGCAAGTAATCAGTCTCGGGTGGCGCTACTTTCTGACTTACCAGCACGGTTACCCACTATTGCGGATGGTACATTATGTGCGGTGGGTACAACACCACGGTCCTTTACGTGGTATGAGTACGAGTCAAGTACATCGGTCTGGAAAGAGGCTGGTGCCTACGGAAGCCCTACCGGCTTTTCAGGTATGCCTATCAAGTTGTCACTGGATGGAACGTACACCGTCAGCACGCCTGAGTATGAAGGACGTTTAGCTGGTTCGGATATTACGAATGAAGACCCCGGTTTTATTGAGCATGGTTTAACGGGTTTCGGTGTGTACCAAGGCCGATTGGTTATCTTGGCAGGACCCGAGGTTTGCATGAGTGCTTCCGGTAGGCCGGAGCGTTGGTATCGTAGTACGGTTACCTCTCTACTTACCGACGACCCTATCAACGTGTTCTCCGGTGCCGCGACCACTACCAACTTTAGCCACTGCGTGCAGTTTAACAAGGACTTACTGTTGTTCTCACGCTCTTGTCAGGCTGTGGTACCCAGCAGTAATGCTGCCATCACACCTGCAACCGCACAGATTGTTATTACCTCCCAGTACACCACTGATACGTTGGCAGCACCTACGGTTGTCGGTCGGTCGGTACTGTACCCTATGCCGCGCACAGAATCCTTTGCCGGTATTCTGGAGATGATTCCAAGCAACACTACGGACTCTCAGTACACATCCAACGACGTGACTGCCCACATCCCAAGGTACATGCCCGGTAGTATTCGGAGCATCACTGCCAGTACCACATCCAACTCCAGCGTACTGTTATGTACCGGAGATGACCGCAGCCTGTTCGTTCAGGATTATCTGTGGTCGGGCGATGAAAAGGTACAGTCGGCGTGGCACCAGTGGGGTGTACCGTACCCTATCGTGTGTGCGTGGTTCGTTCGTGACCGCGTGTACTTGGGTATGCGTGACGGTACATCCATTGTAGTCGGTACAATAGAGCCGCAGGCAGGTACTACGTACTTATCGTACACCCGCCCGTTCTCAGACCTGTACTCACTGGTAACAGTCTCCGGTGGCCTGACTACTGTACCACAGCACCTGCGCGGCGCGTACCTATCCGGTGCAGAGCTGTTCCTAACCTTTGCTGATACCAGTAAGGGTGGTATGTGGGTGGGTATCGACTCCGTTGATACAGGTACGTGGCAGGTGCAGACAGTCAGGAACGTGCCTGATGGTCAGTACTTCCTAGGTGTTCGGTACATGAGCGTACTCACGCCGACACCGCCGCTAGTGCGGGATGCTAACGGTGTTGTTATTGGTACGAGCCGTACCCTGCTTGTGCGGTATGAGCTGACCCTGAAAGACTCGGGTGAGTTCCATGCTGTGGTGGCGGATAGTTCCCGTGTGCTAACAGATGGTACGTACTCCAGCTTGGTTTACTCTAATGTGGAGTTACTGCCGGACGAACCAACCAGCGCTACGCTGGGGCGTGTAGTTATCCCTGTACGCGCACAGGCTCAAGAGACGGTGGCTACGTTCGAAGCAGATTCCGATACCGACCTGTGTATCTTAGATATTGAATACGTCCTACAGTACAGAGCAAGGAGGAAGAGACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ebd54af0db954097904e28e1e72f6c02f770de640c7b6cdeebcc29607390b27
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2872
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Six bacteriophages against potato bacterial diseases Zhang,X. and Kering,K. 2022-08-30 — GenBank