Protein

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Genbank accession
YP_007675228.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,83
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDAYDNRGNSALRPFKTLQRAFLEVARFSYRVGLSNDEFDAFSIYLYPSDYVIDNRPGVADYNDIQPFDANTNFDLTSSSNVLYKFNAATGGIIAPRGVSVVGSDLRRTKIIPKYVPYPTVQGSLGITATNEPLTAAIFKLTGGCYFWQQSFFDGDTNGVYYRGDDISTIAPNFSHHKLTCFEFANITDLELYYQKISKAYATIPDSSGVVAQDQLQVRVEENRIVGPISDEFAISQIIRNGQTATAFTVDALGNPKNHGFSVGVAVNISGVTGPTEQDQLLYNGSFLVTSAQGNQFTYQMSTEPSGNAIGSNILVKVEIDTVDSASPYVFNCSLRSVWGINGMHADGAEATGFKSMVVAQFTGISLQKDDRAFVLYNQSTGAYEPQAAGSGAHINGLAEYRKGWRHRHIKASNDAFIQVVSVFAVGFGDHFFSDSGGDLSITNSNSNFGNTSLRSKGFKATAFTKDKAGQLTHVIPPKSLSDVDEISINWVTIDIASTRSQADSTRLYLYGYTSQLGRPPSKIQGYTIGARRDDVNTPDRLYVALIASGASEPTTHYADINPAGPEVTGTRAGDEQSPIKYDTNRGQWYIQVDSAANTIYTTLQANNLYQNLGFTPTTFIRRIPDARDLNDRTYRFRYILDKDAFPIPRPPITGFVLQPRSSETNSPSYSKTYYIYDVETFQTFERGVTDGIYYLTLLSASVSPSTSNFNDFFFSQQTVDIYPAFDRDNPVADPAPAVSIADNEVLGVVKTTDGATPTPNENKQLSITKETAQFILLETENNLGYNTTSNVLNSIVVTARLGDEEERKIALKLNPDQSVAPLQVELRRYSILRASGHTFEYLGFGPGNYSTAFPSTQVEVLSPQQVRLSQSLKEAAGVAYYSGVNSDGELFVGNQVINPVTGQITNEDIAQLNVLGEEDTTIETFSELVLTDKLTVIGGASNQLESVFSGPVTFQKKVTSSDEIQSLKYTYSNTDGTVLKQTFLAEELNGLPDLQSGLAFNNGDICYNIDWAPGQSLGWVYDTGVWYKIGLSDTTPITSNRYSGVTHYGIGMSPDASNRMKIGGNTFISGDLDVTGKYGCADKYSLATGIANSNNGVTYNGNGATQTFNISPGHTAYSLLVFLNGVAQVPGVDYTVTGNAVDFSISAPPATGDVIQIRELVI
Physico‐chemical
properties
protein length:1190 AA
molecular weight: 129658,25820 Da
isoelectric point:4,86089
aromaticity:0,10588
hydropathy:-0,25866

Domains

Domains [InterPro]
DC_0066
STR
1–1189
DC_0066
IPR023366
STR
264–342
IPR023366
YP_007675228.1
1 1190
Architecture
STR
STR 1-1189 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007675228.1
1 1190
Domain Start End Length (AA) Confidence
N-terminal 1 85 85 0,9714
Central domain 86 284 200 0,8522
C-terminal 285 1190 905 0,1087
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-85
Central
86-284
C-terminal
285-1190

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM6
[NCBI] 		929832 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007675228.1 [NCBI]
Genbank nucleotide accession
NC_020855.1 [NCBI]
CDS location
range 164368 -> 167940
strand -
CDS
ATGGCACTAACCCGTCTTAAAAATATCATCACGTCGAGGACTGGTCGTATTATATACGTCAACCCCGACGACTTTGATGCTTCGGATGCTTACGATAATAGAGGTAACTCAGCGTTACGTCCGTTTAAGACGTTGCAGCGTGCATTCCTAGAAGTAGCAAGATTTTCATACAGAGTTGGTCTAAGTAATGACGAATTCGACGCATTCAGTATCTATCTGTATCCGTCAGATTATGTTATTGATAATAGACCTGGTGTAGCAGATTATAATGATATACAACCATTTGATGCTAACACAAACTTTGATTTAACTTCTTCTAGCAATGTTCTTTATAAATTTAATGCAGCTACTGGTGGTATTATTGCTCCTCGTGGTGTCTCTGTTGTTGGTTCGGACTTACGTCGAACCAAAATCATTCCAAAATACGTCCCTTATCCCACAGTACAGGGTAGTCTCGGTATTACTGCTACTAACGAGCCTCTTACTGCTGCGATTTTTAAACTCACAGGTGGATGCTATTTCTGGCAGCAATCCTTTTTTGATGGAGACACTAACGGAGTCTATTACAGAGGCGACGACATAAGTACCATTGCACCTAACTTCTCACACCATAAGCTAACTTGTTTTGAGTTCGCTAATATCACTGACCTAGAACTATATTATCAGAAGATATCTAAAGCATACGCTACAATTCCTGACTCCTCAGGTGTTGTTGCACAAGACCAATTACAGGTAAGGGTTGAGGAAAACAGAATCGTTGGTCCTATCTCCGACGAATTTGCTATCTCACAAATTATTAGAAATGGACAAACCGCCACAGCGTTCACAGTGGACGCACTCGGCAATCCGAAGAATCATGGATTCTCCGTGGGTGTCGCTGTTAATATATCTGGGGTTACTGGTCCTACTGAGCAGGATCAGCTCCTCTATAATGGTTCGTTCTTGGTAACGTCTGCTCAGGGTAACCAGTTTACTTATCAGATGTCAACTGAACCGTCAGGTAATGCTATCGGTTCGAACATACTTGTTAAGGTTGAGATTGATACTGTTGACTCAGCATCACCATATGTCTTTAACTGTTCTCTAAGATCAGTTTGGGGTATCAATGGTATGCACGCAGATGGTGCTGAAGCAACTGGATTTAAGTCCATGGTTGTTGCTCAGTTCACTGGTATCTCACTACAGAAAGATGACAGAGCATTTGTATTATACAACCAATCAACAGGAGCATACGAACCACAAGCAGCAGGTTCAGGTGCACACATTAATGGACTAGCAGAATATAGAAAAGGATGGAGACACAGACACATTAAGGCAAGTAATGATGCTTTCATTCAGGTCGTTTCTGTGTTCGCTGTTGGATTTGGTGATCACTTCTTCTCAGACAGTGGTGGTGACCTTTCGATTACTAACTCTAACTCCAACTTTGGTAATACATCATTAAGATCAAAAGGATTTAAAGCAACTGCATTTACAAAAGATAAGGCAGGTCAATTAACTCACGTTATCCCACCAAAATCACTTAGTGATGTGGATGAGATCTCAATTAACTGGGTTACTATTGATATTGCATCAACAAGATCACAGGCAGACTCTACTAGACTGTATCTCTATGGATATACCAGTCAGTTAGGCAGACCACCCTCTAAGATTCAGGGTTATACTATTGGTGCAAGAAGAGATGACGTTAATACTCCCGATAGATTATATGTTGCATTGATTGCATCAGGTGCTAGTGAACCAACTACTCACTATGCAGACATTAACCCTGCTGGTCCTGAAGTTACAGGTACTAGAGCAGGTGATGAACAGTCACCTATTAAGTATGATACTAATAGAGGACAGTGGTATATTCAGGTAGATAGTGCTGCTAATACCATTTACACTACACTACAAGCTAACAACTTGTATCAAAACCTAGGATTTACTCCTACCACGTTCATCAGACGTATACCCGACGCAAGAGACCTCAATGACAGAACATACAGATTTAGATACATCCTTGATAAGGACGCTTTCCCGATCCCTAGACCGCCCATTACTGGTTTCGTACTTCAGCCTCGCTCTAGTGAAACTAACTCTCCTTCGTATAGCAAAACTTACTACATCTACGACGTAGAAACATTCCAAACATTTGAGAGAGGTGTGACTGACGGTATATACTATCTGACTCTATTGTCAGCATCAGTTTCACCATCAACGTCAAACTTTAATGATTTCTTCTTCTCACAACAGACTGTAGATATCTACCCTGCATTTGACAGAGACAACCCAGTTGCTGACCCTGCACCTGCTGTTTCTATTGCTGACAATGAAGTCTTGGGTGTTGTTAAGACTACAGATGGTGCTACTCCAACTCCTAATGAGAACAAGCAGTTATCTATTACAAAGGAAACCGCACAGTTTATACTGTTAGAGACAGAAAATAATTTAGGATATAATACTACATCTAACGTACTGAATAGTATAGTTGTTACTGCACGTTTAGGTGATGAGGAAGAAAGAAAGATAGCACTGAAACTAAATCCAGACCAGTCTGTTGCTCCGCTACAGGTTGAGTTACGAAGGTACTCAATTCTGAGAGCATCAGGTCACACGTTTGAGTATCTTGGATTTGGTCCAGGTAACTACTCAACTGCATTCCCATCTACACAGGTTGAGGTTCTATCACCACAACAGGTCAGACTGTCACAGTCACTGAAGGAAGCAGCAGGTGTGGCATACTACTCTGGTGTTAACAGTGATGGTGAACTGTTCGTTGGTAACCAGGTTATTAACCCAGTTACAGGTCAGATCACTAACGAAGATATTGCTCAACTTAACGTGTTGGGTGAAGAGGACACAACTATCGAAACGTTCTCTGAATTGGTTTTAACTGACAAACTAACCGTAATCGGTGGTGCGTCTAACCAGTTAGAATCAGTATTCTCTGGTCCTGTTACTTTCCAGAAGAAAGTCACATCATCAGATGAGATACAGTCACTTAAGTACACTTACTCTAACACTGATGGTACAGTTCTGAAGCAGACATTCCTAGCAGAAGAACTTAATGGACTACCAGATCTACAGTCAGGGTTAGCTTTTAACAATGGTGACATATGTTATAACATTGACTGGGCACCTGGTCAATCACTCGGATGGGTGTATGATACTGGTGTATGGTACAAGATTGGATTGAGTGATACTACACCTATTACATCTAACAGATATAGTGGTGTAACTCATTATGGTATTGGTATGTCACCTGACGCATCCAACAGGATGAAGATTGGTGGTAACACCTTTATTTCTGGTGACTTAGATGTTACTGGTAAATATGGTTGTGCAGATAAATACTCTTTAGCAACTGGTATTGCAAATAGCAATAACGGTGTTACATATAATGGTAATGGTGCAACACAGACGTTTAACATTTCGCCTGGACACACTGCTTACTCACTTTTAGTATTCTTAAATGGTGTCGCTCAAGTTCCTGGTGTGGACTATACAGTAACAGGTAATGCTGTTGACTTTAGTATATCTGCTCCACCTGCAACTGGTGACGTTATTCAGATTCGTGAATTGGTTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fef5afe33ebab1c162d8dd20797a761b000737eaaeae38e884a02a96453e292d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3693
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM6 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank