Protein

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Genbank accession
YP_009799707.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDLNTRFSLYTAQEAADGVAASITQNSLGQWDGQNRRAVNFADPVDPQDLVNKRYFEDVYTPQLDAKVTEATNQANNAASSAATAQGYALAADNSADLAAALLATFKGQYLGALASNPTLDGNGQPVTAGDLYFSTTDNLMKVYTGSAWINAGSTVQSTIKRPVTPIVATAGQTVFPVSGGYDAPYILVFVNGVEVASPDVDVTNGSTIVFSSGLTAGDKVDYAAFGAFQVANPVIDGTSAADFIKTRNARVVTSIADLKALNKNTYNFVLVTGFYASGDGGGGFFLQVPTMPTNGIVQVGNDGGIWQLVVDRDYVSAKQLGARLDGSTDDSSLLNNAKSTLDALGKRLYIPSGVCRISTAITPPKAGVVGDSPQASIIQCNNCSAFLFPANFGLSRPACVIEKLGIQSYSNTCDGLYAFRAPGVASGASPVYNSGLTVRDVEIGTGGRFGGGFSLKDFFRVNVENIGMTDVSSAVLLTGSVVQAVFRNVTANGDNAPTVLNRYGFQTAAASYSSGTLGPEHISTWDCSFIRYTRGVQHDAGLMVSFNNTDLETFTHGFYLSQPCTVRGGISAPAPAASGTAAWIGLFKAISDFDVANGTLIDDLEINTLNTPGTPASSYGVLIGNNVNKCVGTTIRSPRIRGNTSSMVGGIVANLAGGDIVIEDAIINGSVVTGTTVSVSNASYARVVGNRSATGGTVNGSLSITDNGVGSIGDVRGNAFATITNTLNAYSGTWTPGTIPNGTPAATTVAVPGAVVGDKVVVGLSSLTGSANCIISGYVSSTGNVAVLLYNVSGASQTIPSGTLQVTVLKS
Physico‐chemical
properties
protein length:812 AA
molecular weight: 83523,18830 Da
isoelectric point:4,87164
aromaticity:0,07882
hydropathy:0,10825

Domains

Domains [InterPro]
DC_0126
ATT
1–137
DC_0126 DC_0706
IPR011050
STR
311–529
IPR011050
IPR012334
STR
314–413
IPR012334
YP_009799707.1
1 812
Architecture
ATT
STR
ATT 1-137 | STR 186-812
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799707.1
1 812
Domain Start End Length (AA) Confidence
N-terminal 1 331 331 0,9962
Central domain 332 720 390 0,9925
C-terminal 721 812 91 0,9883
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-331
Central
332-720
C-terminal
721-812

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoP1EGY
[NCBI] 		2070026 Uroviricota > Caudoviricetes > Autographivirales > Gyeongsanvirus RsoP1EGY >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799707.1 [NCBI]
Genbank nucleotide accession
NC_047946.1 [NCBI]
CDS location
range 5224 -> 7662
strand +
CDS
ATGGACCTCAACACTCGGTTCTCTCTGTACACTGCTCAGGAGGCCGCTGATGGTGTTGCAGCATCCATCACTCAGAACTCCCTGGGGCAGTGGGACGGCCAGAACCGCAGGGCCGTCAACTTCGCAGACCCGGTTGATCCACAAGACCTGGTGAACAAGCGATACTTCGAGGACGTGTACACACCTCAGTTGGACGCGAAGGTCACCGAAGCCACCAACCAGGCCAACAACGCGGCCTCCAGCGCCGCCACTGCGCAGGGCTATGCTCTCGCTGCGGACAACTCCGCGGACCTCGCTGCGGCCCTCCTGGCGACCTTCAAAGGCCAGTACCTCGGTGCCCTTGCATCTAACCCCACGCTGGACGGTAACGGCCAGCCGGTGACTGCTGGTGACCTCTACTTCAGCACCACCGATAACCTGATGAAGGTGTACACCGGGTCCGCGTGGATCAACGCTGGGTCAACCGTCCAGTCCACCATCAAACGTCCTGTCACACCCATCGTGGCAACCGCAGGCCAGACCGTGTTCCCGGTGTCTGGTGGGTACGACGCCCCATACATTCTCGTGTTTGTGAATGGGGTTGAGGTGGCTTCTCCAGATGTGGACGTGACTAACGGCAGCACCATCGTATTCTCCAGCGGCCTGACTGCTGGAGATAAAGTGGATTACGCAGCGTTTGGTGCGTTCCAGGTGGCCAACCCGGTTATCGATGGGACCAGTGCCGCAGACTTCATCAAGACACGCAATGCCCGTGTAGTTACCTCTATTGCCGACCTGAAGGCCCTCAATAAGAACACCTACAACTTCGTTCTCGTCACTGGCTTCTATGCTTCAGGGGATGGTGGCGGCGGTTTCTTCCTTCAGGTTCCCACGATGCCCACCAACGGTATCGTTCAGGTCGGGAATGACGGAGGCATCTGGCAGTTGGTGGTTGATCGGGATTATGTTTCCGCGAAACAACTCGGTGCGAGACTGGACGGTTCAACGGATGACTCCTCTCTCCTGAACAACGCCAAGTCCACTCTCGATGCTCTTGGTAAGAGGCTGTATATCCCGTCTGGGGTTTGCAGAATCTCAACAGCAATCACTCCACCAAAGGCTGGTGTGGTTGGGGATAGTCCTCAAGCGTCCATCATCCAGTGTAACAACTGCTCTGCATTCCTATTCCCAGCAAATTTTGGGCTCTCTCGTCCGGCTTGTGTCATTGAGAAGTTGGGGATTCAGTCCTACAGCAACACCTGCGATGGGCTATACGCTTTCCGTGCCCCTGGGGTGGCATCTGGAGCATCGCCCGTCTACAACAGCGGCCTAACTGTTAGGGATGTTGAGATTGGTACGGGCGGACGATTCGGTGGCGGTTTCTCACTGAAGGACTTCTTCCGAGTGAACGTAGAGAACATTGGCATGACTGATGTGAGTTCCGCCGTATTGCTCACCGGGTCAGTTGTGCAGGCAGTGTTCCGAAATGTCACCGCAAACGGTGATAACGCACCAACTGTTCTTAACCGATATGGTTTCCAAACAGCCGCAGCTTCCTATTCCAGCGGTACGCTAGGTCCTGAACACATTAGTACGTGGGATTGCAGCTTCATTCGCTATACACGCGGTGTTCAACACGATGCTGGGCTCATGGTCTCGTTCAACAATACGGACCTGGAAACTTTCACACACGGCTTCTATCTCTCGCAGCCCTGCACTGTGCGTGGTGGTATTAGCGCCCCGGCTCCGGCAGCTTCAGGGACTGCTGCGTGGATTGGGCTTTTCAAAGCTATTTCTGATTTTGACGTAGCCAACGGCACTCTGATCGATGACCTTGAGATCAACACGCTAAACACCCCAGGAACTCCAGCCTCTTCGTATGGGGTTCTCATTGGCAACAATGTGAATAAGTGCGTTGGTACTACAATCCGTAGTCCCAGGATTCGAGGTAACACTAGTTCAATGGTCGGTGGGATTGTCGCTAATCTAGCTGGAGGTGACATCGTTATCGAGGATGCCATCATCAACGGCAGTGTGGTTACTGGAACTACGGTGTCTGTGAGCAATGCTTCCTATGCAAGGGTTGTGGGCAATCGAAGCGCCACCGGTGGGACTGTAAATGGTTCCCTGTCAATCACAGATAACGGTGTTGGTTCCATTGGTGATGTTCGTGGAAATGCGTTTGCCACCATTACCAACACCCTCAATGCCTATTCCGGTACATGGACGCCTGGAACAATTCCTAACGGAACACCAGCAGCAACAACGGTGGCCGTCCCTGGCGCAGTGGTTGGTGACAAAGTAGTGGTCGGCCTTTCCAGCCTGACCGGATCGGCCAACTGCATCATTTCCGGCTATGTGTCTTCCACCGGAAATGTGGCTGTCCTGTTGTATAACGTCTCTGGTGCATCACAGACGATTCCCTCCGGGACTCTCCAGGTAACAGTCCTCAAGTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
072edc5410b8e623522ff0fecd9a95e624ef12686636e06484ba3749d484cb76
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8027
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequencing, genome analysis and host range of a novel Ralstonia phage RsoP1EGY isolated from Egypt Ahmad,A.A., Addy,H.S., Elhalag,K.M., Nasr-Eldin,M.A., Hussien,A.S. and Huang,Q. 2018-04-13 — GenBank