Protein

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Genbank accession
YP_008130083.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MSQVQVSKLAGVASSLGQVTLSPGHTLNIEGKLKFNDTGAHTLPVGTTGERPTSPVIGDTRFNSGTNAFEIYTGVLWKSLGAAGAGGSTVGDYASPAANGIQVKLANRPSGYYWIQPIGYEEPTYCYVDCDNYDGGWVCVMTAGSASTNHYGTFESSNLYTQTIGGVSASYVPVSGTGYSVSSGRKYDDSFIRAVCEARNGGDEVINVRLAANNTQPPGGPYDTYNGGTVGGDNWNYASFIKYRGGIQYFSALNTGGDGRQGDRREGNFRVSHVYPYNWEQPGGWEHIRLYNNNYKIFDYHSNPSNLQTSRYGNNRVLWGYTGNTSQGIYGSGPASGQGHPGYFFVR
Physico‐chemical
properties
protein length:347 AA
molecular weight: 37338,30990 Da
isoelectric point:6,64859
aromaticity:0,12968
hydropathy:-0,52450

Domains

Domains [InterPro]
DC_0522
ATT
1–115
DC_0522 DC_2300
IPR036056
STR
105–154
IPR036056
IPR036056
STR
105–145
IPR036056
YP_008130083.1
1 347
Architecture
ATT
STR
RBD
ATT 1-115 | STR 116-154 | RBD 184-347
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008130083.1
1 347
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,0888
Central domain 190 336 148 0,0749
C-terminal 337 347 10 0,9804
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-336
C-terminal
337-347

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM3
[NCBI] 		536453 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus pssm3
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008130083.1 [NCBI]
Genbank nucleotide accession
NC_021559 [NCBI]
CDS location
range 109153 -> 110196
strand +
CDS
ATGAGTCAAGTACAAGTCAGTAAATTAGCAGGAGTAGCATCATCACTAGGACAGGTGACATTGTCGCCAGGACATACTCTTAATATTGAGGGTAAACTAAAATTTAATGATACAGGTGCTCACACATTACCAGTAGGGACTACAGGAGAAAGACCTACAAGTCCTGTAATTGGTGATACAAGATTTAATAGTGGCACTAATGCGTTTGAAATTTACACTGGTGTGTTATGGAAAAGTCTAGGTGCTGCAGGAGCAGGTGGTTCAACAGTAGGAGATTATGCAAGTCCTGCTGCTAACGGAATACAAGTTAAACTTGCCAATAGACCCTCTGGTTATTATTGGATACAACCAATAGGTTATGAAGAACCAACCTATTGTTATGTTGATTGTGATAATTATGATGGTGGATGGGTATGTGTTATGACTGCAGGATCAGCATCAACTAATCACTACGGAACTTTTGAATCATCAAACTTATATACTCAAACGATTGGTGGTGTATCAGCATCATATGTTCCTGTATCTGGTACTGGTTATAGTGTATCAAGTGGTAGAAAATATGATGACTCATTTATTAGAGCAGTATGTGAAGCACGTAATGGTGGTGATGAAGTTATAAACGTTAGACTAGCAGCAAATAATACACAACCACCAGGCGGTCCTTATGACACTTATAATGGTGGTACAGTTGGTGGAGACAACTGGAATTATGCCTCATTCATTAAATATCGTGGTGGTATTCAATACTTTAGTGCGTTAAATACTGGTGGGGATGGTCGTCAGGGTGACAGACGAGAAGGAAACTTTAGAGTCTCTCATGTATATCCTTACAACTGGGAGCAACCTGGCGGATGGGAGCATATCAGATTATATAATAACAATTATAAAATATTTGATTACCACTCAAACCCATCAAACCTTCAGACATCTCGTTATGGTAATAATAGAGTTCTGTGGGGTTATACTGGTAATACCTCTCAGGGTATCTATGGTTCAGGTCCTGCAAGTGGTCAAGGTCATCCAGGTTATTTCTTTGTAAGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d6390f057db78c252c728874be655ef801fb6c8a192b70908824cab72419966
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4909
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank