Protein

View in Explore
Genbank accession
WCI99795.1 [GenBank]
Protein name
putative collagen triple helix repeat protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MALEFMEVVAKTYGDLERLVKAKMLEGWMPFDSLIDNRFTIAIVMVKGSDAQLTDFRILGDSTRVKLISKANKLIADDPEWEVFGHPQIFGADDYIVSLSKGFKGTTGRDGMAGPQGPQGPRGEVGPEGPQGPRGDDGADGEKGERGAVGPQGPIGPQGIQGPQGVQGPAGLKGDKGDKGDVGPQGPQGLKGDTGEKGDPGEVGPAGLTFRGQWVPGTGYTKDDTVVYNGSTYFAVNDIAADEEPGVSPLWVVLAAQGTKGDKGDKGDPGDIGPQGEKGDTGPQGPRGIQGPQGIQGLTGEQGPQGEQGPQGIVGPTGPQGPKGDTGPQGIQGPQGIRGLTGPIGPQGPQGEKGEKGDKGEKGETGATGPQGPAGQNNTNNPVYTTQLTVSTSYSAIAIPNNPGVSFTIRRVGNNIEYSFTGNSIPGRYFDVEVVNFPSADVVKRYQSNQTISGTNRYVVGDPAGYTGGGYKRIQFSARDWGDKNIIMIDVFHLQRPTDTSFSIAIRIETFKLP
Physico‐chemical
properties
protein length:514 AA
molecular weight: 53541,68480 Da
isoelectric point:4,93757
aromaticity:0,06809
hydropathy:-0,62257

Domains

Domains [InterPro]
DC_0876
STR
1–285
DC_0876 DC_0329 G3DSA:1.20.5.320 DC_0523
IPR050149
Unmapped
101–376
IPR050149
IPR008160
STR
147–205
IPR008160 G3DSA:2.10.10.20 IPR008160 DC_2298
WCI99795.1
1 514
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-212 | ATT 213-253 | STR 254-284 | ATT 285-343 | STR 344-420 | RBD 421-513 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS-UDF157lw
[NCBI] 		3024423 Uroviricota > Caudoviricetes > Drexlerviridae > Rogunavirus > Rogunavirus UDF157w
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCI99795.1 [NCBI]
Genbank nucleotide accession
OQ243221 [NCBI]
CDS location
range 10530 -> 12074
strand +
CDS
ATGGCTTTAGAGTTTATGGAAGTTGTAGCTAAGACTTATGGCGACCTGGAGAGGCTAGTAAAGGCAAAAATGCTAGAAGGATGGATGCCATTTGATAGCTTAATTGACAATAGATTTACTATCGCAATTGTTATGGTTAAGGGTAGTGATGCGCAGCTTACCGACTTTAGGATTCTCGGTGATAGCACTAGAGTTAAATTAATAAGCAAGGCTAACAAATTAATTGCTGATGACCCTGAGTGGGAGGTTTTCGGTCACCCTCAAATATTTGGCGCTGACGATTACATAGTTTCATTATCAAAAGGCTTTAAGGGAACTACTGGTAGGGATGGCATGGCTGGCCCGCAAGGACCGCAAGGACCGCGCGGCGAAGTTGGCCCAGAAGGTCCGCAGGGTCCAAGGGGTGACGATGGCGCTGATGGGGAAAAGGGTGAGCGTGGAGCAGTAGGCCCGCAAGGACCAATTGGCCCACAGGGTATTCAGGGTCCACAGGGAGTTCAAGGGCCAGCTGGATTAAAGGGCGATAAAGGTGATAAGGGTGATGTTGGCCCACAGGGACCACAAGGATTAAAAGGTGATACTGGAGAGAAAGGCGACCCTGGAGAAGTTGGCCCTGCTGGTTTAACATTCCGTGGTCAGTGGGTTCCTGGCACTGGTTATACAAAAGACGATACCGTAGTTTATAACGGATCAACTTACTTTGCGGTTAATGATATTGCAGCTGATGAGGAGCCAGGTGTATCACCTTTGTGGGTGGTTCTTGCCGCTCAAGGCACGAAAGGTGACAAGGGTGATAAAGGCGACCCTGGAGATATCGGACCTCAAGGGGAGAAGGGTGATACTGGACCTCAAGGTCCGAGAGGTATTCAGGGTCCGCAAGGTATTCAGGGGTTAACAGGTGAGCAAGGTCCGCAAGGTGAGCAGGGGCCGCAAGGGATTGTTGGGCCGACTGGACCGCAAGGGCCAAAAGGTGACACCGGACCTCAAGGTATTCAAGGGCCGCAAGGCATCAGGGGACTTACTGGGCCGATAGGACCACAGGGACCGCAGGGAGAGAAGGGCGAAAAGGGAGATAAAGGGGAAAAAGGCGAAACTGGTGCAACCGGACCACAGGGTCCAGCGGGTCAAAATAATACAAATAATCCAGTTTATACAACTCAACTTACCGTATCTACAAGCTACTCAGCTATAGCCATACCAAATAACCCTGGTGTATCTTTTACAATCAGGAGGGTTGGTAATAACATTGAGTACTCTTTTACAGGCAACTCAATTCCAGGAAGGTATTTTGATGTTGAGGTTGTAAACTTTCCATCAGCTGACGTAGTTAAAAGATACCAGTCAAATCAGACAATTTCAGGTACAAATAGGTATGTTGTAGGTGATCCTGCTGGTTATACTGGCGGTGGATACAAAAGGATTCAATTCTCAGCTAGAGATTGGGGGGATAAAAACATTATAATGATTGATGTTTTTCACCTTCAGCGCCCAACTGATACTAGTTTTAGCATCGCAATTAGGATTGAGACATTCAAGCTGCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f45a089b2142e6c91338284ee244506dec44844e563cdd706cebffca36a94677
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6100
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antimicrobial potential of a new Rogue-like Escherichia coli phage UDF157lw against E. coli O157:H7 biofilm Liao,Y.-T., Ho,K.-J., Zhang,Y., Salvador,A. and Wu,V.C. 2024-01-22 — GenBank