Protein

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UniProt accession

A0A8S5MR62 [UniProt]

Protein name

YadA-like protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MNKTVTAVLAISALAVNVAGATSNNTVGGTDNTISTNSTSSAVWGFQNNIDANNALAFGTNNTVTGENGFAGGNNATAAGRNSFAFGSHAESLVEYTIAIGNQARTASYDSVAIGNGAFVSGESSVAFGRSNNVTGENSVAIGANNGTVAGGQSAVVGYNNKIGTQKEQLVFGSNSETTGQGALVFGTHAKALATDAVAFGNNTLADRANSVAIGTNAVTDDAVGVDGVDLNGTRHIFAGEQPGAVVSFGSKARTGAGGVAQYNRQLQNVSAGRVESDSLDAVNGSQLYAAYDEINTLGTKVRTNTSDINTLQDTSANHEGRITALERRTYNMAGEINNRINATAQRINKLGASSAALAGLHPLEFNRNDKVSYAVSYGHYRNSNAVALGAFIRPNERLMIGVGATLGAENQYNVSLSFKTGKGADYVAEAKDAQSRISKLEALVAKLMAEIEK

Physico‐chemical properties

protein length:	454 AA
molecular weight:	46671,54710 Da
isoelectric point:	5,92248
aromaticity:	0,06167
hydropathy:	-0,20595

Domains

Domains [InterPro]

IPR011049
STR
3–149

IPR011049 IPR011049 G3DSA:1.20.5.170 G3DSA:3.30.1300.30 Coil

DC_0394
RBD
7–108

DC_0394 IPR008640 IPR008640 IPR008635 G3DSA:3.30.1300.30

cd12820
STR
24–146

cd12820 IPR045584

IPR008640
Unmapped
53–76

IPR008640 IPR011049 Coil IPR005594

IPR008640
Unmapped
96–118

IPR008640

A0A8S5MR62

1 454

Architecture

STR

RBD

ATT

STR 3-322 | RBD 323-366 | ATT 367-421 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011049	STR	IPR011049	3	149	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
DC_0394	RBD	DC_0394	7	108	Novel HMM	DC_0394	C-terminal	Low	Positional only	49 proteins / 49 hits
cd12820	STR	DC_0258	24	146	InterPro cluster	cd12820	Central	Low	Positional only	46 proteins / 51 hits
IPR008640	Unmapped	-	53	76	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
IPR011049	STR	IPR011049	95	292	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR008640	Unmapped	-	96	118	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
IPR008640	Unmapped	-	121	145	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
IPR011049	STR	IPR011049	150	269	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR008640	Unmapped	-	193	218	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
IPR008635	RBD	DC_0221	266	310	InterPro cluster	Trimeric autotransporter adhesin YadA-like, stalk domain	C-terminal	Medium	Text match	14 proteins / 17 hits
G3DSA:1.20.5.170	STR	G3DSA:1.20.5.170	270	322	Merged direct domain	G3DSA:1.20.5.170	Central	Low	Positional only	8 proteins / 8 hits
IPR045584	RBD	IPR045584	281	418	Merged direct domain	Pilin-like	C-terminal	Low	Positional only	5 proteins / 5 hits
Coil	Unmapped	-	309	329	Coils	Coil	-	-	-	-
G3DSA:3.30.1300.30	RBD	G3DSA:3.30.1300.30	323	421	Merged direct domain	G3DSA:3.30.1300.30	C-terminal	Low	Positional only	62 proteins / 62 hits
G3DSA:3.30.1300.30	RBD	G3DSA:3.30.1300.30	323	420	Merged direct domain	G3DSA:3.30.1300.30	C-terminal	Low	Positional only	62 proteins / 62 hits
IPR005594	ATT	DC_0200	367	419	InterPro cluster	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	C-terminal	Medium	Text match	43 proteins / 43 hits
Coil	Unmapped	-	431	451	Coils	Coil	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

A0A8S5MR62

1 454

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0020
Central domain	11	364	355	0,8455
C-terminal	365	454	89	0,5077

Note: Constraints were applied during segmentation.
Fixed 23 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-10

Central
11-364

C-terminal
365-454

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Caudovirales sp. ctqI92 [NCBI]	2826785	Uroviricota > Caudoviricetes >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

DAD84591.1 [NCBI]

Genbank nucleotide accession

BK014963 [NCBI]

CDS location

range 31773 -> 33137
strand -

CDS

ATGAATAAAACAGTAACAGCGGTACTCGCGATTTCTGCGTTGGCTGTCAATGTAGCCGGCGCAACTAGCAACAATACGGTAGGTGGTACAGACAATACCATATCTACGAATTCTACCAGCTCCGCAGTATGGGGCTTTCAAAACAACATCGACGCAAATAATGCGCTAGCCTTTGGTACTAATAATACTGTAACAGGCGAAAACGGCTTTGCTGGTGGCAATAATGCCACTGCAGCAGGTCGCAATAGTTTTGCATTCGGCAGTCACGCCGAAAGCTTGGTGGAATACACCATAGCGATTGGTAACCAAGCAAGAACGGCGTCCTATGATAGTGTAGCCATCGGCAATGGCGCGTTCGTATCTGGTGAATCTAGTGTGGCCTTTGGCCGTTCCAATAATGTGACTGGTGAAAACTCCGTGGCAATCGGTGCTAACAATGGCACCGTAGCAGGTGGCCAGTCCGCCGTAGTAGGTTACAACAATAAAATCGGGACGCAAAAAGAACAGCTTGTATTCGGATCTAACTCCGAAACAACTGGCCAAGGTGCTCTCGTCTTTGGCACACACGCCAAAGCATTAGCCACTGACGCCGTTGCCTTTGGTAATAATACTCTAGCAGATCGTGCAAATTCCGTTGCTATCGGCACCAACGCGGTGACCGATGATGCGGTAGGCGTTGACGGTGTAGACCTTAACGGCACTCGTCACATCTTCGCCGGCGAGCAACCTGGCGCCGTAGTTTCCTTCGGTTCCAAAGCTCGCACAGGTGCAGGTGGCGTGGCTCAATATAACCGTCAACTCCAAAATGTGAGCGCAGGACGCGTTGAGTCTGATAGCTTGGACGCGGTCAACGGCTCCCAGTTGTATGCCGCGTACGATGAAATCAACACATTAGGCACAAAGGTACGTACTAATACATCTGACATCAACACACTTCAAGATACCTCTGCTAACCACGAAGGCCGAATTACTGCGCTTGAACGCCGCACATATAACATGGCCGGTGAAATTAACAATCGTATCAATGCAACAGCCCAACGCATTAACAAGTTAGGTGCAAGCTCTGCAGCATTAGCTGGGCTCCATCCATTGGAGTTCAACAGAAATGATAAGGTCAGCTACGCTGTAAGCTATGGCCATTACCGTAATAGTAATGCCGTAGCGCTTGGGGCGTTTATCCGTCCGAATGAACGATTGATGATTGGCGTAGGTGCTACTTTAGGCGCTGAGAATCAATACAATGTAAGTCTTTCGTTTAAAACAGGAAAGGGCGCGGACTACGTAGCGGAAGCCAAGGATGCGCAAAGCCGTATCTCTAAACTAGAAGCATTAGTAGCGAAGCTAATGGCAGAGATTGAAAAATGA

Genome Context

Gene Ontology

	Description	Category	Evidence (source)
GO:0019867	outer membrane	Cellular Component	IEA:InterPro (UniProt)
GO:0015031	protein transport	Biological Process	IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID

494ca258db58bf3fee8c5f0113c9536eb1aff58c38edbc83d56520f5ed9608de

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8990

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence