Protein

View in Explore

Genbank accession

QYC52534.1 [GenBank]

Protein name

putative tail fiber protein

RBP type

TSP

Evidence RBPdetect

Probability 0,66

Protein sequence

MAKPRSQLVVWARQDVALPNTGRINKVKPIDDLLDKGYDKGQKPAAEEFNYILNMCTDWVRYMHDEKFPEFEREIEEKLEAFKGEMEREMDKVRDEMDQLEASVNNKLASFESYLVPVGAVISWPSTTIPKGWLECNGQGFNIGQNPKLYAVLGRGNVPDYRGLFLRGWAHGSAVNDPDANRALGSVQNDAIRNITGNFIIDDQAIWPGGNRTGLPNIGGAFYYDPSSHGKIGYDAGSDDRKWRALMAHFDASRVVPTAAENRPKNVAVMYIIKADSATASGGSVPTGIEVSPSTSEGLIGNSFKASAQVLPVNMAPQYPITWTSQNPSVATVDGQGNVTVVGQGTTSIIASISTGLSSRITVTGHKPLTGLALANLENIEVGESIRLTVARTPSDSTEPLIFSTGNTGIANVNQDGDVVGIAEGSTTISARGRYSGVSARVNITVVPAVVVTTVEDIMLGIEQQAPNAAPKGCVITYVDGGDNMEYVRYKPIQKKVNGVWVTIEG

Physico‐chemical properties

protein length:	506 AA
molecular weight:	54507,70910 Da
isoelectric point:	5,23228
aromaticity:	0,07115
hydropathy:	-0,26126

Domains

Domains [InterPro]

DC_0413
STR
1–490

DC_0413

Coil
Unmapped
72–110

Coil IPR051934 IPR003343 IPR003343

SSF88874
STR
114–275

SSF88874 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

IPR037053
ATT
115–167

IPR037053 IPR008964 IPR003343

IPR011083
ATT
119–165

IPR011083 IPR003343 IPR008964

QYC52534.1

1 506

Architecture

STR

ATT

STR

STR 1-114 | ATT 115-167 | STR 168-490 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0413	STR	DC_0413	1	490	Novel HMM	DC_0413	Central	Low	Positional only	85 proteins / 85 hits
Coil	Unmapped	-	72	110	Coils	Coil	-	-	-	-
IPR051934	Unmapped	-	110	214	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	114	275	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	115	167	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	119	165	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR003343	STR	DC_0008	285	363	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	285	365	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	286	363	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	287	351	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	368	452	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	368	447	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	380	431	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	383	446	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

QYC52534.1

1 506

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	295	295	0,5656
Central domain	296	494	200	0,0824
C-terminal	495	506	11	0,9978

Note: Constraints were applied during segmentation.
Fixed 127 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-295

Central
296-494

C-terminal
495-506

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage SSBI34 [NCBI]	2861009	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Salmonella typhimurium [NCBI]	90371	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

QYC52534.1 [NCBI]

Genbank nucleotide accession

MZ520832 [NCBI]

CDS location

range 70897 -> 72417
strand +

CDS

ATGGCTAAACCACGCAGCCAACTTGTTGTTTGGGCACGTCAAGATGTAGCATTGCCTAACACAGGAAGGATCAATAAAGTAAAACCCATTGATGACCTTTTAGACAAGGGTTATGATAAGGGGCAAAAACCAGCAGCAGAAGAATTCAACTACATCTTGAACATGTGTACCGATTGGGTTAGGTACATGCATGATGAAAAGTTCCCAGAATTCGAAAGAGAGATTGAAGAGAAGCTGGAAGCCTTTAAGGGGGAGATGGAAAGAGAGATGGACAAGGTCCGTGATGAAATGGACCAACTAGAAGCCTCTGTTAACAATAAGCTTGCATCTTTCGAATCCTACCTCGTGCCAGTTGGTGCAGTAATATCATGGCCCTCCACCACAATCCCGAAGGGGTGGTTAGAGTGCAACGGTCAGGGTTTCAATATTGGACAAAACCCTAAACTGTACGCTGTACTTGGAAGAGGAAACGTACCTGATTACCGAGGGCTGTTCCTAAGAGGATGGGCGCATGGGTCTGCTGTTAATGACCCAGATGCAAACAGGGCATTGGGATCTGTCCAAAACGATGCAATCCGGAACATAACTGGTAACTTCATCATAGATGACCAAGCAATTTGGCCTGGCGGTAACAGAACAGGACTTCCTAATATCGGAGGGGCATTCTATTACGATCCCAGCAGCCACGGCAAGATTGGATATGACGCAGGGTCAGATGATCGGAAATGGCGAGCTTTGATGGCCCACTTTGATGCCTCCAGGGTTGTACCTACCGCCGCCGAAAACAGACCAAAGAACGTTGCAGTCATGTATATCATCAAGGCAGATTCTGCAACTGCTTCTGGAGGTAGCGTACCAACAGGGATTGAGGTATCACCTTCCACAAGTGAAGGGTTAATCGGAAATTCATTTAAAGCCTCGGCTCAAGTTCTTCCTGTTAACATGGCCCCTCAGTACCCTATTACGTGGACTAGTCAGAACCCTTCTGTCGCCACGGTAGACGGGCAGGGGAATGTAACGGTTGTCGGTCAAGGAACAACCTCAATAATTGCATCCATTTCCACAGGGCTAAGTTCAAGGATTACAGTCACTGGACACAAACCTCTTACCGGATTAGCATTGGCTAATTTGGAAAATATCGAGGTTGGTGAGAGCATAAGGTTGACTGTTGCAAGAACTCCAAGCGATTCTACAGAACCTTTGATATTTTCCACAGGCAATACAGGAATTGCGAACGTAAACCAAGATGGAGATGTTGTAGGTATTGCAGAAGGTTCCACAACAATCTCTGCAAGGGGAAGATACTCCGGTGTGTCTGCAAGAGTAAACATTACGGTTGTCCCTGCGGTTGTAGTTACCACAGTGGAAGATATTATGTTAGGTATCGAACAACAGGCTCCTAATGCGGCACCAAAAGGTTGTGTCATTACCTATGTTGATGGTGGTGATAACATGGAATATGTTAGATATAAACCCATCCAGAAGAAAGTGAATGGCGTTTGGGTAACTATCGAGGGCTAA

Genome Context

Tertiary structure

PDB ID

708e6a078ed58aab8bb4a577f1bfa2fe27e99a53b1effd41b0986638ffce9a96

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7819

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
SE-Phage-SSBI34 a novel bacteriophage of Salmonella typhimurium, provides insight in to genus certrevirus	Sattar,S., Khanum,S., Altermann,E., Bailie,M., Shamsi,B. and Ullah,I.	2022-01-25	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature