Protein

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Genbank accession
XOD31759.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MATLKQIQFKRSKTAGQRPAASVLAEGELAINLKDRVLFTKDDQGNIIDLGFAKGGSIDGNVIHIGNYNHTVDYTLNGTFTQTGNFNLIGIARVTRDIIAAGQIMTEGGELITKSSGTSHVRFFDSNSRERGIIYSPANDGLTTQVLNIRVQDYAAGSESTYAFSGNGLFTSPEVSAWKSMSTPQILTNKVITNNKSTGDYDIYSMADNVPLSESTTAINHLRVMRNAVGSGIFHEVKDNDGITWYSGDGLDAYLWSFTWSGGIKSSHSISIGLTPGNKDYSILGPSSIALGDNDTGFKWHQDGYYFSVNNGTKTFLFSPSETTSLRKFVAGYSTNGTDLTTPPTENYALATVVTYHDNNEFGDGQTLLGYYQGGRYHHYFRGKGTTNINTHGVLLVTPGNIDFFGGLININGRNNASTLLFRANTTGSSSVDNMNIRVWGDTFTNPSVGNRKNVMEISDATSWMSYIQRLTTGEVEMNVNGSFESSGVIAGNRGVHTTGEISSGAVNALRIWNDDYGAIFRRSENSLHIIPTAYGEGKNGNIGPLRPFRMPLDTGKVSIPNMDLSHTTFDENGSIKFTSHGAGAGGYDIQYVQAAPIFQEIDDDAVSKYYPIVKQKFLNGKSVWSLGTEISSGTFVIHHLKEDGSQGHTSRFNQDGTVNFPDNVLVGGGEAAIARNGNIFSDIWKTFTSAGDITNIRDEIATRVAKEGDTMTGKLTLSAGNDALVLTAGAGASSHISSDVGGTGNWYIGKGGGDNGLGFYSYITQGGVYITNNGEISLSPQGQGTFNFNRDRLHINGTQWVAHKSGAWGDQWGLEAPIFVDFGYVSNDCYYPIIKGKSGITNEGYFSGVDFGMRRITNNWAQGIIRVGNQENGSDPQAIYEFHSNGTFYAPSLLKSNRVSAGGGDPVWGGPCIVIGDNDTGLVHGGDGRINMVANGIHIANWGAGYQSHPGLWDSTGAFWTEVGRAIVSHGHLVQANDSYSTFVRDVYVRSDIRVKKDLVNFENASQKLSKINGYTYMQKRGLDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTTEIAELKSEIEELKALIKSLLK
Physico‐chemical
properties
protein length:1102 AA
molecular weight: 119203,54190 Da
isoelectric point:5,58138
aromaticity:0,09800
hydropathy:-0,34574

Domains

Domains [InterPro]
DC_0538
STR
1–684
DC_0538 IPR030392
IPR048390
ATT
450–549
IPR048390 DC_0339 Coil
IPR030392
CHP
992–1051
IPR030392
DC_2320
RBD
1019–1102
DC_2320
XOD31759.1
1 1102
Architecture
STR
ATT
STR
RBD
STR 1-449 | ATT 450-549 | STR 550-1032 | RBD 1033-1102
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD31759.1
1 1102
Domain Start End Length (AA) Confidence
N-terminal 1 458 458 0,1040
Central domain 459 657 200 0,2518
C-terminal 658 1102 444 0,8103
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-458
Central
459-657
C-terminal
658-1102

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb1
[NCBI] 		3387546 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD31759.1 [NCBI]
Genbank nucleotide accession
PQ666539 [NCBI]
CDS location
range 157328 -> 160636
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACTGCAGGTCAACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGATGACCAAGGAAATATTATTGATCTGGGTTTTGCTAAAGGCGGTAGCATTGACGGGAATGTTATTCATATAGGAAACTATAATCACACTGTTGATTATACTTTAAATGGCACCTTCACTCAGACAGGTAATTTTAATTTAATCGGTATTGCTCGAGTAACTCGCGATATTATTGCCGCCGGGCAGATTATGACCGAAGGCGGAGAACTTATTACAAAAAGTTCAGGTACATCACATGTTCGTTTTTTCGATAGCAATAGCCGCGAACGCGGAATCATTTATTCACCGGCTAATGATGGATTAACTACACAAGTACTTAATATCAGAGTTCAAGACTACGCCGCTGGTAGCGAAAGCACTTATGCATTTTCAGGCAATGGCCTATTTACTTCACCTGAAGTATCAGCATGGAAATCTATGTCAACTCCTCAGATTTTGACCAACAAAGTCATTACTAATAATAAATCTACAGGTGATTATGACATTTATTCGATGGCAGATAATGTTCCACTGTCTGAAAGCACTACTGCTATTAATCATCTCCGTGTCATGCGTAATGCAGTCGGTTCTGGCATTTTCCATGAAGTTAAAGATAATGATGGAATAACTTGGTACAGCGGAGATGGGCTAGACGCTTATCTTTGGTCATTTACATGGAGCGGCGGAATTAAATCGAGTCACTCAATTTCTATCGGTTTAACACCTGGCAATAAAGATTATTCAATACTAGGACCATCTAGTATTGCTTTAGGGGATAATGATACTGGATTTAAATGGCATCAGGATGGATATTATTTCAGCGTCAATAATGGAACGAAAACATTTTTATTTAGTCCTAGCGAAACAACTAGCCTAAGAAAATTTGTAGCTGGATATTCTACTAACGGAACCGATTTAACTACTCCTCCTACTGAAAACTATGCTCTCGCTACTGTCGTGACATATCACGATAATAACGAGTTTGGAGATGGTCAGACTCTTTTAGGATATTATCAAGGTGGTAGATATCATCATTATTTCCGCGGTAAGGGTACTACAAACATTAATACTCACGGCGTTTTGTTAGTTACTCCTGGTAATATTGACTTTTTTGGCGGCTTAATTAATATTAATGGTAGAAATAATGCTTCGACATTACTATTTAGAGCTAACACAACTGGTAGTAGCTCTGTTGATAATATGAACATACGCGTTTGGGGCGATACGTTTACTAATCCTAGTGTAGGTAATCGTAAAAATGTCATGGAAATTTCTGACGCAACTAGTTGGATGAGCTATATTCAAAGACTTACTACTGGTGAAGTAGAAATGAACGTCAATGGTTCATTTGAATCATCCGGTGTTATTGCTGGAAATAGAGGAGTTCATACAACAGGCGAAATTTCATCTGGAGCGGTGAATGCGCTTCGCATTTGGAACGATGACTATGGTGCTATTTTCCGTCGTTCAGAAAACAGTCTTCATATTATTCCGACTGCTTACGGTGAAGGTAAAAATGGAAATATCGGTCCACTTCGCCCGTTCCGTATGCCTTTAGATACAGGTAAAGTAAGTATTCCTAATATGGATTTGAGTCATACTACTTTTGATGAAAATGGTTCTATTAAATTTACTAGTCACGGAGCAGGCGCTGGCGGTTATGATATTCAGTATGTTCAAGCAGCTCCTATTTTCCAGGAAATTGATGATGACGCTGTAAGCAAATATTATCCTATTGTTAAACAGAAGTTTCTAAACGGTAAATCCGTTTGGTCTTTAGGTACTGAAATTAGTTCAGGTACATTCGTTATTCATCATCTGAAAGAAGATGGTTCACAAGGCCATACGTCTCGTTTTAATCAAGACGGTACTGTTAACTTCCCAGATAACGTTCTGGTCGGCGGCGGTGAAGCTGCTATTGCTCGTAATGGTAATATTTTCTCGGATATTTGGAAAACGTTTACTTCAGCAGGAGACATTACAAATATTCGCGATGAAATAGCTACCCGTGTTGCTAAAGAAGGCGATACGATGACCGGTAAGTTGACTTTATCTGCTGGAAATGATGCCCTTGTTTTAACTGCAGGCGCGGGTGCTTCATCGCACATCAGTAGTGATGTAGGTGGTACAGGTAACTGGTATATAGGCAAAGGCGGCGGCGACAATGGTCTAGGTTTTTATAGTTACATTACACAAGGCGGTGTATACATAACAAATAATGGCGAAATATCGCTTTCTCCTCAAGGTCAAGGAACATTTAATTTTAATAGAGACCGCCTTCATATAAACGGTACACAATGGGTTGCGCATAAATCTGGCGCCTGGGGTGACCAATGGGGTTTAGAAGCTCCTATATTTGTAGATTTTGGATACGTCAGCAATGACTGCTATTATCCTATTATTAAAGGAAAATCTGGTATTACTAACGAAGGATATTTTTCCGGCGTAGATTTTGGTATGCGTCGTATCACTAATAACTGGGCGCAAGGTATTATTCGTGTAGGTAACCAGGAAAACGGTTCTGACCCACAAGCTATATATGAATTCCACTCTAATGGTACTTTTTATGCCCCGAGCTTACTTAAGAGCAACAGAGTATCGGCTGGTGGTGGTGACCCGGTATGGGGTGGGCCGTGTATTGTTATTGGTGATAATGATACCGGATTAGTTCATGGTGGTGACGGCCGAATCAATATGGTTGCCAATGGTATACATATTGCAAACTGGGGCGCAGGCTATCAATCTCATCCTGGGCTTTGGGATTCAACCGGTGCTTTTTGGACAGAAGTTGGAAGAGCTATCGTTTCTCATGGGCATCTCGTTCAGGCAAATGATAGTTATTCAACGTTTGTCCGTGATGTTTATGTCCGTTCTGATATTCGCGTTAAAAAAGACCTCGTTAATTTTGAAAATGCTTCTCAGAAGCTTTCTAAAATTAACGGTTACACTTATATGCAGAAGCGAGGCCTGGATGAGGAAGGTAATCAGAAATGGGAACCTAACGCCGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCAGAATTAGTTGAAGGTGACCCTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAGCATACTACAGAAATTGCAGAACTTAAATCAGAAATCGAAGAACTTAAAGCATTAATTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ebc9f55cd91b2e248e44607c2077102587a90abdf736fce5cd5277dee0d4905
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2883
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50