Protein

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Genbank accession
XYL02946.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,56
Protein sequence
MADLKRKFRAQEGLDAAGEKVINVQTADRTIPSDGVNVEFLVQENTLQQYDETRWYPKNFAVIYDNRIWVANREIIKPSGAFNELYWTALRTDAKWKTESAGTVVLKSGDFISVDTENRGTVKFVLPNNPQDGDTIFLKDIGGQPGYADVTIDASIQSIVWLGSQVRSVRMTHPYSQMVLVFSNRLWQLYVSDNERTATTITPASIHEAQANEFIVRRYTTGAPIRVTLPKFANDGDIINFTDMDGMNPLFHMFVSTYDANTSIGSVGTTSLEVRSSGDGFIVFDAVEKLWRIWDGDLRTRLRIIKEDTEVRPNDHVMVFGTNNSTIKKVVITLPPAPAIGDTVKISLNYMRKGQTVDITCTGTDTIAASVSLLQFPKRSEYPPDATWVQNKTLSFNGDTSYVPVLDLSYIEDAGLKYWVVSDNMPTVERVDSKTDTTRARLGVIALATEAQAQVDLENNPEKELAITPETLAKRVATKLRRGIARLVTLTEIQAPTTGPHLDDVIVTPAMLNEKTATETRRGVAEIATQSETDGSTDDTTIVTPKKLHNRKASEILTGILALVKTGITTVAGVDRDTKGTNVYDNTENTKAVTPASLFENKATYTSQGGTYLATENEVINGTVHDPKVPTVVTPVELHKKTATEGRIGFTEVATQPETDAGTDDFRYITPKKLSGRKATQDLTGLSRIATQQEFNAGALDDVISTPFKIKTYFSDPARHSVEPLSGLVESGNSWDHYKLDIKKASETQRGTLAVATKILVDAGVDDQTIITPKKLQDKKTSETTEGIIQIATRVETTTGTVGNKAVPPSHLKYAIQEQADWEATPTRRGPVKLTELALTFVGDKVTGSGVKFNAVTGLYENDDVKLNAGNYFKTGYAVSPFEMNKTLQNFLPINAIAVDSQKLDGLDSLQFIRRDIDQTVNGSLTLTKQLNTSAPLVSSSTSKFTNIMATIDLTVGDDSSHSVINLNAKGNHWLIDAQSQSTYLDFTADADVLRLKRDGDVEVGQTLKAGNRIDAMKGFSVEGGTMIINPTPSNIQFGSQSKATNIQTTDASNLTVTDSTGTSTVITTKNMVNQIGLNFVKKIGDSMTGNLLIDATLRVQIPEGVVTPDQPPTDSNPNAWSSSIKTSAVYNKLPGFVVPVYGTNEEGNPVAIDYTEVKGPGTLTQHGIDKNSIWQIWAPRPATVDATYFAQTFWIRNFNALTGKWDKWGRMYTSNNPPTSKEIGAVAAGGSAFDNLTIRDWLQIGNVRMTPNPVTQSIDYTWIP
Physico‐chemical
properties
protein length:1265 AA
molecular weight: 138509,02410 Da
isoelectric point:5,42798
aromaticity:0,07273
hydropathy:-0,33763

Domains

Domains [InterPro]
DC_1986
ATT
10–126
DC_1986 DC_1209
IPR048391
ATT
1113–1213
IPR048391
XYL02946.1
1 1265
Architecture
ATT
STR
ATT
STR
ATT 10-126 | STR 342-1112 | ATT 1113-1213 | STR 1214-1249 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYL02946.1
1 1265
Domain Start End Length (AA) Confidence
N-terminal 1 980 980 0,9216
Central domain 981 1179 200 0,2361
C-terminal 1180 1265 85 0,1624
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-980
Central
981-1179
C-terminal
1180-1265

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SAg-RPN19
[NCBI] 		3452860 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Agona
[NCBI] 		58095 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02946.1 [NCBI]
Genbank nucleotide accession
PV890570 [NCBI]
CDS location
range 57245 -> 61042
strand +
CDS
ATGGCCGATTTAAAAAGAAAATTCAGAGCTCAAGAAGGTCTGGATGCGGCGGGTGAGAAAGTAATTAACGTACAAACCGCTGATCGTACTATTCCGAGCGATGGTGTTAACGTTGAATTTCTCGTCCAAGAAAATACATTACAACAATATGACGAAACCAGATGGTATCCAAAGAATTTCGCAGTGATTTATGATAACCGCATTTGGGTTGCAAATCGCGAAATCATTAAACCTTCTGGCGCTTTCAACGAACTCTATTGGACAGCTTTGCGTACTGACGCAAAATGGAAAACCGAATCTGCTGGAACAGTAGTCCTTAAATCAGGGGACTTTATTTCTGTTGATACAGAAAATCGTGGAACTGTTAAATTTGTTCTTCCTAATAATCCACAAGATGGCGATACTATTTTCTTAAAAGATATAGGTGGTCAGCCAGGTTATGCTGATGTAACAATTGATGCTTCTATTCAATCTATCGTTTGGCTTGGATCTCAAGTTCGCAGTGTACGAATGACTCATCCGTATAGTCAAATGGTTTTAGTTTTCAGTAATCGTTTGTGGCAACTTTATGTCAGCGACAATGAGCGCACTGCAACAACCATTACCCCGGCGAGTATTCATGAAGCACAAGCTAATGAATTCATCGTTCGTCGTTATACGACTGGGGCTCCTATTCGTGTTACTCTTCCTAAGTTTGCGAATGATGGAGATATTATTAATTTCACAGACATGGATGGAATGAACCCTCTGTTCCATATGTTTGTAAGTACTTATGATGCTAATACTTCTATTGGATCAGTAGGAACAACTTCTTTAGAAGTGCGTTCTTCTGGTGATGGATTTATTGTGTTTGATGCGGTTGAAAAGCTGTGGAGAATTTGGGATGGTGATCTCCGCACTCGTCTTCGCATCATAAAAGAAGATACTGAAGTACGTCCGAATGATCATGTGATGGTATTTGGAACAAATAATAGTACTATTAAAAAAGTTGTAATAACTTTGCCTCCGGCACCAGCTATTGGTGATACTGTTAAGATTTCTTTGAACTATATGCGCAAAGGTCAAACAGTTGATATCACTTGTACTGGGACAGATACTATAGCAGCTTCAGTTTCATTGCTTCAATTCCCTAAACGTTCAGAATATCCACCAGATGCTACATGGGTTCAAAATAAAACTCTGAGCTTCAATGGTGATACTTCTTACGTTCCAGTATTAGACTTATCTTATATTGAAGATGCTGGATTGAAGTACTGGGTTGTTTCTGACAACATGCCGACAGTAGAACGTGTCGATTCAAAGACCGACACTACTCGTGCTCGTTTAGGTGTTATTGCTTTGGCTACTGAAGCCCAAGCTCAAGTAGATCTTGAAAATAACCCAGAAAAAGAATTAGCAATTACTCCAGAAACATTAGCTAAAAGAGTTGCTACTAAACTTCGTCGTGGTATTGCTCGTTTAGTCACTTTAACTGAAATTCAAGCTCCAACTACTGGTCCTCATCTGGATGATGTAATTGTTACTCCAGCAATGCTGAATGAGAAAACAGCTACTGAAACTCGTCGTGGTGTAGCTGAAATTGCTACTCAGTCAGAAACTGATGGTTCAACTGATGATACTACGATTGTGACTCCTAAAAAGTTGCATAATCGTAAAGCTTCAGAAATATTGACTGGTATTTTAGCTCTAGTTAAAACCGGAATAACCACTGTCGCTGGTGTAGATCGTGATACTAAAGGAACTAACGTATACGATAATACTGAAAATACAAAAGCTGTAACTCCAGCTTCTCTGTTTGAAAATAAAGCAACTTATACCTCACAAGGTGGTACTTATTTAGCAACTGAGAACGAAGTAATTAATGGAACTGTGCATGATCCTAAAGTTCCAACTGTTGTAACCCCAGTTGAGTTACATAAGAAGACTGCAACGGAAGGAAGAATTGGTTTTACTGAAGTAGCTACTCAGCCAGAAACTGATGCTGGTACTGACGATTTCCGATACATTACGCCTAAGAAATTATCTGGACGTAAAGCAACCCAAGATTTAACTGGATTGTCTCGTATCGCTACTCAACAAGAATTCAATGCTGGCGCATTGGACGATGTCATCTCGACTCCGTTTAAAATTAAAACTTATTTCTCTGATCCTGCTAGACACTCTGTTGAACCGTTGTCTGGATTAGTTGAATCAGGTAACTCCTGGGACCATTATAAACTTGATATTAAGAAAGCATCTGAGACGCAGCGTGGTACTTTGGCGGTTGCTACTAAGATTCTGGTAGATGCTGGTGTAGATGACCAAACTATCATCACGCCTAAAAAGCTTCAAGATAAGAAGACATCAGAAACGACAGAAGGTATTATTCAGATTGCGACTCGTGTTGAAACGACGACTGGTACTGTGGGTAATAAAGCAGTTCCTCCTAGTCATCTGAAGTATGCTATTCAAGAACAAGCTGATTGGGAAGCTACGCCTACTCGTCGTGGTCCGGTTAAATTGACTGAATTAGCATTAACCTTCGTTGGTGATAAAGTAACTGGTTCTGGCGTGAAGTTCAATGCTGTTACTGGTCTTTATGAGAATGATGATGTTAAACTGAATGCTGGAAATTATTTCAAAACTGGATATGCAGTATCTCCATTTGAAATGAATAAAACACTTCAGAATTTTTTGCCGATCAACGCAATTGCTGTAGATTCACAGAAGCTCGATGGATTAGATTCACTGCAGTTTATTCGCCGTGATATCGATCAGACTGTCAATGGTTCATTAACTTTGACCAAGCAGTTAAACACTAGTGCACCTCTGGTGTCCTCTAGTACATCGAAGTTCACCAACATAATGGCTACTATAGACCTGACCGTTGGTGACGACTCAAGTCACTCTGTGATTAATTTGAATGCCAAAGGGAACCATTGGTTGATCGATGCTCAGTCTCAATCAACTTACTTGGATTTCACTGCAGATGCTGATGTGCTTCGTCTGAAGCGTGACGGTGATGTTGAAGTTGGACAAACGCTTAAAGCTGGCAATCGAATCGATGCTATGAAAGGCTTTAGCGTAGAAGGTGGTACAATGATTATTAATCCTACCCCTTCAAATATTCAATTTGGTTCACAGTCAAAAGCTACTAATATTCAGACAACTGATGCTAGTAATTTGACAGTGACAGATTCAACCGGTACTTCGACGGTAATCACTACCAAGAACATGGTAAATCAAATTGGATTGAACTTCGTCAAGAAAATTGGCGATTCAATGACCGGAAACCTTTTGATTGATGCTACGCTTCGCGTACAGATTCCTGAAGGTGTTGTAACTCCAGATCAGCCGCCAACTGATTCTAATCCGAACGCATGGTCTTCTTCAATTAAAACTTCTGCTGTGTACAATAAGCTTCCGGGCTTTGTTGTTCCGGTATATGGAACAAATGAAGAAGGTAATCCAGTTGCAATTGATTACACCGAAGTTAAAGGTCCAGGTACGTTAACTCAGCATGGTATTGACAAAAATAGCATTTGGCAAATTTGGGCACCTCGCCCAGCAACAGTCGATGCTACTTATTTTGCTCAAACTTTCTGGATACGTAACTTCAACGCCCTGACTGGAAAATGGGATAAATGGGGCAGAATGTACACCAGCAATAACCCACCTACTTCTAAGGAAATTGGTGCTGTTGCGGCAGGTGGTTCTGCATTTGATAACTTAACCATTCGTGATTGGTTGCAGATCGGAAATGTTCGTATGACTCCGAACCCGGTAACTCAATCTATCGATTATACTTGGATTCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
827a48ae07df411ca317e15fa24e823a35c19c0eced070feba3c808e8bb2138d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7961
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome analysis of Salmonella phage vB_SAg-RPN19 Imklin,N., Jaipakdee,S. and Nasanit,R. 2022-01-10 — GenBank