Protein

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Genbank accession
AYD80471.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSFNSRERSLADGQPVRLYQFSRGAIRWSYNSSDRDITYQNQIFRTVQGGITDNGIICSGDPQSDQFVITAPADLDVALLYKTRSPSGAIDLVVYDMHYGDTEAAVSWVGQIGDVDWPTVDSCRITCVSEDELMDQPGLIDTYCRTCTAVVGDHRCKVNLVPYRVTLTPQSISGWVISSGVVAGYVDGWFTGGYVEWQVDGDNYDSRYIERHAGPDLYILGGTEGIPAGGQLRVYPGCDGLAQTCDDKFSNLPNFRGFNAMQGKSPFDGDQVW
Physico‐chemical
properties
protein length:273 AA
molecular weight: 30081,02820 Da
isoelectric point:4,42164
aromaticity:0,10989
hydropathy:-0,29744

Domains

Domains [InterPro]
DC_0733
STR
1–187
DC_0733 IPR018964
IPR011928
Unmapped
19–271
IPR011928
PF09931
ATT
32–159
PF09931 IPR018964
AYD80471.1
1 273
Architecture
STR
ATT
STR
RBD
STR 1-31 | ATT 32-159 | STR 160-187 | RBD 188-264 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYD80471.1
1 273
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,7605
Central domain 272 271 1 0,1111
C-terminal 272 273 1 0,7423
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-271
C-terminal
272-273

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ps56
[NCBI] 		2301638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD80471.1 [NCBI]
Genbank nucleotide accession
MH719192 [NCBI]
CDS location
range 34516 -> 35337
strand +
CDS
ATGAGTTTTAACAGCCGCGAACGCTCGCTCGCGGATGGGCAGCCGGTGCGGCTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCACCTACCAGAACCAGATTTTCCGCACGGTCCAGGGCGGCATCACTGACAACGGGATCATCTGTTCCGGCGATCCGCAGTCCGACCAGTTCGTCATCACCGCGCCGGCCGACCTCGACGTCGCGCTGCTGTACAAGACCCGGTCGCCGAGCGGTGCCATCGACCTGGTCGTCTACGACATGCACTACGGCGACACCGAGGCAGCGGTTTCCTGGGTGGGCCAGATTGGCGATGTGGACTGGCCGACCGTGGACAGCTGCCGCATAACGTGCGTGTCAGAAGACGAACTGATGGACCAGCCCGGCTTGATCGACACCTACTGCCGCACCTGCACGGCAGTCGTTGGCGACCATCGCTGCAAGGTCAACCTCGTTCCGTATCGCGTGACGCTGACGCCGCAGAGCATCAGCGGCTGGGTGATCTCCAGCGGCGTGGTCGCCGGCTATGTCGATGGCTGGTTTACCGGGGGCTACGTCGAGTGGCAAGTGGACGGCGACAACTACGATAGCCGCTACATCGAGCGGCACGCCGGACCCGATCTTTACATCCTGGGCGGCACCGAGGGCATTCCGGCAGGTGGCCAACTGCGGGTTTATCCAGGTTGCGACGGGCTCGCGCAGACCTGCGACGACAAATTCAGCAACCTCCCCAACTTCAGGGGGTTTAACGCGATGCAAGGCAAGTCGCCATTCGATGGCGACCAGGTCTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e5baa53731b11803c02653d6fbcfe886a1ab3d0aa9390581cf1d92370c6be4ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9005
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and comparative genomics of a group of B3-like Pseudomonas phages Cazares,A., Carballo-Ontiveros,M.A. and Guarneros,G. 2014-12 — GenBank