Protein

View in Explore
Genbank accession
AGH07410.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MADRNALVIIDGQVQELPAGDSLVGGGSGGGAGTVVYKAMLSTYINNDFVTYSASEFATKGNIYKMLSERVLTSITVMLDLGQSVKLVIAKVGDVSPYTIEEIVYESPVKVITENNSNRFELTNGLNLNINTNYAFMFVRVDGTSVTTLGIPFEGVAPWNDRDGHFVFEAASRYATTQPQVGDDTFYNTTTNVTMVFATVDPDLHDLLNTGESINFISNVGGTYTVGPDITLSDPDTTQVTESPFVNSPLINTGQFDTVTNKPIWRFATISDNQSNGIDWAVSFEVATSVSFRYMNSNEVGFDYLHVYVDGVEVFNSKNKTVGTWFSHQFVIDAGSHVIRISYQKDNSNSSNDDTVYVSGFGYQEAVGGPFKKNDFIEFENSIYFALNDTTATPDTEPQSWVLFEKGSQPFGAKFWRWTFTSNRLTTIGYISPDVGTNGTYTQADVTYGPAANAFDGSSANFWGYASGDVATGDTWVQIEYSEEKWIQNYSITSRSGSGSQGPDGWILSYSEDGVTWVDVSTETGVPSWGNSETRDFVNQEGLPSVLELPNYTSNHKNKVLKAVDGELIWASENEQINVTASETLTDSDFIGGILKKVESGTEVAITVPAGLTNKELCTFIQTNLGKISFVADTGVTILSADNAKKTRTRYSSATLIPVKDTVNVYYLVGDLEV
Physico‐chemical
properties
protein length:674 AA
molecular weight: 73575,26430 Da
isoelectric point:4,35190
aromaticity:0,11424
hydropathy:-0,21128

Domains

Domains [InterPro]
IPR000421
RBD
420–533
IPR000421
DC_1166
STR
421–674
DC_1166
G3DSA:2.60.120.260
STR
432–543
G3DSA:2.60.120.260
IPR000421
RBD
446–524
IPR000421
IPR008979
STR
449–532
IPR008979
AGH07410.1
1 674
Architecture
STR
STR 421-674
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07410.1
1 674
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,3479
Central domain 229 432 205 0,2721
C-terminal 433 674 241 0,6143
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-432
C-terminal
433-674

Taxonomy

  Name Taxonomy ID Lineage
Phage Sulfitobacter phage phiCB2047-B
[NCBI] 		754046 Uroviricota > Caudoviricetes > Schitoviridae > Raunefjordenvirus > Raunefjordenvirus CB2047B
Host Sulfitobacter sp. CB2047
[NCBI] 		1525218 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Sulfitobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07410.1 [NCBI]
Genbank nucleotide accession
HQ317387 [NCBI]
CDS location
range 50573 -> 52597
strand -
CDS
ATGGCTGATCGTAATGCACTCGTTATCATTGACGGGCAAGTTCAAGAACTTCCGGCTGGGGATTCCCTTGTAGGTGGGGGTTCTGGTGGAGGCGCTGGAACTGTTGTCTATAAAGCGATGCTATCCACCTACATTAACAATGATTTTGTTACTTATTCCGCTTCTGAATTTGCCACAAAAGGCAACATCTATAAGATGTTGTCTGAACGTGTTTTAACTTCAATTACTGTTATGTTGGATTTGGGCCAAAGTGTAAAATTGGTAATTGCTAAAGTAGGTGATGTTTCACCTTATACTATTGAAGAGATTGTATATGAATCTCCTGTTAAAGTGATCACTGAAAATAACTCTAACAGGTTTGAACTAACTAATGGGCTTAACTTAAATATAAATACTAATTATGCATTTATGTTCGTTAGAGTAGATGGCACCAGTGTCACAACTTTAGGTATTCCATTTGAAGGTGTTGCTCCATGGAATGATAGAGATGGTCATTTCGTTTTTGAAGCGGCTTCAAGATACGCAACAACCCAACCTCAAGTTGGGGATGATACTTTTTATAATACCACAACTAATGTTACTATGGTGTTTGCTACTGTTGATCCTGACTTGCATGATTTGTTAAATACTGGTGAATCTATTAACTTCATCTCTAACGTAGGTGGTACATATACTGTTGGGCCTGACATCACCCTATCTGATCCAGATACTACTCAGGTGACTGAAAGTCCCTTTGTAAACAGTCCTTTAATCAATACAGGTCAGTTTGATACTGTCACCAATAAACCAATTTGGAGATTTGCAACCATCTCTGATAACCAGAGTAATGGTATTGATTGGGCTGTTTCATTCGAAGTAGCGACAAGTGTTTCTTTTAGATACATGAACTCAAACGAAGTTGGGTTTGATTACCTACACGTTTACGTAGATGGTGTTGAAGTTTTCAACTCCAAAAACAAAACTGTTGGTACTTGGTTTTCTCACCAATTTGTAATTGATGCAGGATCACATGTAATTCGTATTTCTTATCAAAAGGATAACTCGAATTCTAGCAACGATGACACTGTTTATGTATCAGGATTTGGTTACCAAGAAGCAGTTGGTGGTCCATTCAAAAAGAATGATTTCATTGAATTTGAGAATAGCATTTATTTTGCTTTGAATGACACAACAGCTACTCCAGATACAGAACCTCAATCTTGGGTTTTGTTTGAGAAAGGTAGTCAACCTTTTGGTGCTAAATTCTGGAGATGGACGTTTACATCCAACAGACTTACTACAATTGGTTATATCTCACCTGATGTAGGTACAAATGGTACGTACACTCAAGCTGACGTTACATATGGTCCTGCTGCGAATGCCTTTGACGGTTCTAGTGCTAATTTCTGGGGCTACGCTTCAGGGGATGTAGCTACTGGAGATACATGGGTTCAGATTGAATATTCTGAAGAAAAGTGGATTCAGAATTACTCAATCACTTCCCGTAGTGGTTCAGGTAGCCAAGGTCCAGATGGTTGGATTCTGTCCTACTCTGAGGATGGTGTTACTTGGGTAGACGTATCAACTGAAACAGGTGTCCCTAGTTGGGGTAACTCTGAAACAAGAGACTTTGTTAACCAAGAAGGATTACCTTCTGTACTTGAACTACCTAACTATACAAGCAACCATAAAAACAAGGTACTAAAAGCTGTTGATGGTGAATTGATCTGGGCAAGTGAAAACGAACAAATCAATGTTACTGCTTCTGAAACCCTTACCGATTCTGATTTCATTGGTGGAATCTTGAAGAAGGTTGAAAGTGGTACTGAAGTTGCAATCACTGTACCTGCTGGTTTGACCAACAAAGAGCTTTGTACTTTCATTCAAACAAATCTAGGTAAAATCTCTTTTGTAGCTGACACTGGTGTAACTATTCTCTCAGCAGACAATGCTAAGAAAACACGTACAAGGTATAGCTCTGCTACACTGATTCCAGTTAAGGATACTGTGAATGTCTACTATCTAGTAGGGGATTTAGAGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aa91b09afcdc42d6fed1ebcda63b9cafb4c859fa5df986b1326ff0496ce086c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7511
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequence of the Sulfitobacter sp. Strain 2047-Infecting Lytic Phage {Phi}CB2047-B Ankrah,N.Y., Budinoff,C.R., Wilson,W.H., Wilhelm,S.W. and Buchan,A. 2014 24435853 GenBank
The Genome Sequence of Sulfitobacter phage pCB2047-B Henn,M.R., Buchan,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank