Protein

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Genbank accession
ABK54427.1 [GenBank]
Protein name
60 kDa protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSGHTPFNTIPNEGYCCETLNDPIVDKMIGNAYYVVKFVALRMPFIKNVSDNMTQLLAIHNKLTELSAIYTKLDELQLIHNNLDKLQELYNQLSKLTGLYDNLQALLRVYDNLTPINTVASNIDAVNTVATDIAKVIIVSAQIDKVITVANSITNVNTVAGSIDAVNTVSTNINAIKNVNTNMAALLDLDNHMTELLAVHARLGDLVTIAEQLDTIIADHEKYATAEGAGLIGFNQAQTYAANTVGAMLRQVITMGNDKGGYAVAGKLTSARGVWSLATGSINMNAPTAGAVANLVLNYKAGKVSGLLVAPSQQMALDGLIMGASTADNTATVSVTAPLRFKADLTAKTISGVNTRIMPSSAVTLNVDAYGGITLGYPPSLQTVEPVMTFITPTGKAPLTPRFSSVTAGAAVLVMVGEAEAQLKYSGGGWAAVSDWDSGTYCAFDTVSGELTVYHSTLIKDSTVTFSLLLPTDDTQLTAQLKSHTDSSFVVKIAKPDGSLLDAPLEGMGIMYSRGMHGIYKVPYGSLIVDVGRVQVKFSEFNTTEGISVVGINSNA
Physico‐chemical
properties
protein length:556 AA
molecular weight: 58899,62760 Da
isoelectric point:5,21625
aromaticity:0,06115
hydropathy:0,18291

Domains

Domains [InterPro]
DC_0265
STR
1–556
DC_0265
IPR001611
STR
72–93
IPR001611
Coil
Unmapped
76–106
Coil
ABK54427.1
1 556
Architecture
STR
STR 1-556
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage N4
[NCBI] 		2886925 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABK54427.1 [NCBI]
Genbank nucleotide accession
EF056009 [NCBI]
CDS location
range 64233 -> 65903
strand -
CDS
ATGAGCGGTCATACCCCGTTTAATACTATCCCCAACGAAGGTTATTGCTGCGAAACACTTAATGACCCAATCGTTGATAAGATGATTGGTAATGCTTACTACGTTGTTAAGTTCGTAGCATTACGAATGCCCTTTATTAAAAATGTCAGTGATAATATGACTCAGCTACTTGCTATCCATAACAAGTTAACTGAGCTATCTGCTATCTACACTAAGCTAGATGAACTACAACTTATCCATAATAATTTAGATAAGTTACAGGAACTCTACAATCAATTATCTAAACTGACTGGTCTATATGACAATCTTCAGGCATTGCTGAGGGTCTATGACAACCTGACCCCAATCAATACTGTAGCTTCTAACATTGATGCAGTTAATACAGTAGCAACTGATATTGCTAAGGTAATTATTGTTTCTGCTCAAATTGATAAAGTAATTACTGTTGCTAATAGCATTACCAATGTGAATACCGTTGCTGGTTCCATTGATGCTGTTAATACAGTAAGTACTAATATCAATGCGATTAAGAATGTGAATACCAATATGGCAGCACTGCTTGATTTGGATAATCACATGACTGAACTACTGGCTGTACATGCCAGGTTAGGTGACTTAGTTACCATTGCAGAACAGCTTGATACAATCATTGCTGACCATGAAAAGTATGCTACTGCTGAGGGTGCAGGTCTGATTGGCTTTAATCAGGCACAGACTTACGCAGCTAATACAGTAGGTGCAATGCTTCGTCAGGTTATTACTATGGGTAATGACAAAGGTGGTTATGCTGTAGCTGGTAAACTGACTTCTGCCCGTGGAGTATGGTCGTTAGCTACTGGTTCCATCAACATGAATGCCCCTACTGCTGGTGCAGTAGCTAACCTGGTTCTTAATTATAAAGCCGGTAAAGTTAGTGGCTTGTTGGTAGCACCTAGTCAACAAATGGCATTGGATGGCCTGATTATGGGTGCATCTACTGCTGACAATACAGCTACTGTATCTGTTACTGCCCCACTCCGTTTTAAAGCAGACCTAACTGCTAAAACAATCTCCGGTGTGAATACTCGTATCATGCCTTCCAGTGCAGTGACTCTGAATGTAGATGCATACGGTGGTATCACTCTTGGGTATCCACCTAGTCTTCAGACTGTAGAACCAGTGATGACTTTCATTACCCCTACAGGTAAGGCTCCACTGACTCCACGATTCTCCAGTGTTACGGCAGGGGCTGCTGTACTGGTTATGGTTGGGGAAGCAGAAGCACAACTGAAATATTCAGGTGGTGGTTGGGCTGCTGTATCTGATTGGGATTCGGGTACTTATTGTGCATTCGATACAGTATCTGGTGAGTTAACGGTATATCACAGTACTCTTATCAAAGATTCTACTGTTACATTTAGCTTACTGTTACCTACCGACGATACTCAGCTTACGGCACAACTGAAGAGTCATACGGATAGTTCCTTCGTAGTGAAGATTGCTAAACCAGATGGTTCTTTACTTGATGCCCCATTGGAAGGTATGGGTATCATGTACTCTCGTGGTATGCACGGAATCTATAAAGTACCTTATGGTTCTCTAATCGTAGATGTCGGTCGTGTTCAGGTTAAGTTCAGTGAATTTAACACCACGGAAGGTATTTCCGTTGTTGGTATTAACTCCAACGCTTAA

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Structure of the ends of the coliphage N4 genome Ohmori,H., Haynes,L.L. and Rothman-Denes,L.B. 1988 3172206 GenBank
The bacteriophage N4-coded single-stranded DNA-binding protein (N4SSB) is the transcriptional activator of Escherichia coli RNA polymerase at N4 late promoters Cho,N.Y., Choi,M. and Rothman-Denes,L.B. 1995 7877167 GenBank
Identification, cloning, and characterization of the bacteriophage N4 gene encoding the single-stranded DNA-binding protein. A protein required for phage replication, recombination, and late transcription Choi,M., Miller,A., Cho,N.Y. and Rothman-Denes,L.B. 1995 7673246 GenBank
N4 RNA polymerase II, a heterodimeric RNA polymerase with homology to the single-subunit family of RNA polymerases Willis,S.H., Kazmierczak,K.M., Carter,R.H. and Rothman-Denes,L.B. 2002 12193610 GenBank
Genome sequence and analysis of bacteriophage N4 Hendrix,R.W., Rothman-Denes,L., Hatfull,G.F., Lawrence,J.G. and Pedulla,M. 2003-02-15 — GenBank
Partial sequence and sequence analysis of the Bacteriophage N4 virion RNA polymerase and five other phage late gene products Kazmierczak,K.M. and Rothman-Denes,L.B. 2003 — GenBank