Protein

View in Explore
Genbank accession
YP_010673921.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MARELMPKSGIMMPHVVVTRDAAVVGVSTVDGQAGAIDLTGKYLQKTDAAATYQTKTEGASKDFVLDSIQPIMSGALFREDPWVVNDTPFRSTGANGVESVDMMKVTPDNSIKIGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEIEDLPFAAIGSYVKDSKGRTIGVTRTGINSDIKQLTQKVTFTQPVTVADAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVVSDGQLLNRADYPDLWAYAQLLSPIEDSLWLSNIYQRGRYSTGNGTTTFRVPDRNGIQEGSLRALYGRGDGGNSAANGQVFDSAAPNITYASPHTMVTLASAPGQVATNGAIQSITSTDDVAPVGAGGKYISTNFDASRSSPIYGRSTEEILTRNFVGVWTIRAHGGFVAANTSWSVINRDSAAPALNTSVVGGKVESKYTNPTSSQYARMYISSSWGSVCSAVIEAQGTSTHAYKFYEDGTVDFRQSGKTNPFRMYTPTGIWSGLTDAGPNNLTTDGMDRVAISGGSDTVVRGYSIGGSKPNGYPTKVGYHMYLPGNDAFGIACTTIGGDNGRFCRYFYDIDGQIYGSTDYGNFSYTKSGVSDENLKHNIVDIDAERAIEVIKGLKFKSFVYNDDEKNRSRRGIIAQQAETVEPLYVKTRKYPGTGNGDSMKEQKELDTTPMLLDTMQVVQNLLKRVEELEAQLAAK
Physico‐chemical
properties
protein length:723 AA
molecular weight: 77947,89250 Da
isoelectric point:5,77663
aromaticity:0,08852
hydropathy:-0,36860

Domains

Domains [InterPro]
DC_1514
STR
20–723
DC_1514
IPR030392
CHP
618–720
IPR030392
IPR030392
CHP
618–670
IPR030392 Coil
YP_010673921.1
1 723
Architecture
STR
STR 20-723
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010673921.1
1 723
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,9701
Central domain 72 270 200 0,4348
C-terminal 271 723 452 0,9086
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-270
C-terminal
271-723

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoP-CHD5UKE1
[NCBI] 		2865805 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus CHD5UKE1
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010673921.1 [NCBI]
Genbank nucleotide accession
NC_070989.1 [NCBI]
CDS location
range 12369 -> 14540
strand +
CDS
ATGGCTAGAGAATTAATGCCCAAATCTGGTATAATGATGCCTCATGTGGTTGTAACCAGAGATGCGGCTGTTGTTGGTGTTTCTACCGTAGATGGACAGGCAGGGGCTATTGACCTCACTGGAAAGTATCTACAGAAAACTGACGCAGCTGCTACCTACCAGACTAAAACAGAAGGCGCATCTAAAGATTTTGTGCTGGATTCAATTCAACCTATTATGTCTGGTGCTTTGTTCCGAGAAGATCCTTGGGTTGTGAACGACACACCTTTCCGCTCTACTGGAGCTAACGGAGTAGAGTCAGTGGATATGATGAAGGTCACTCCTGATAACTCAATTAAGATTGGCAGCTATGCTTCCTCGGTTCAAGGCGTAGAAATTCATTCTGCTGGTCGTCTTCAGGTTGTTGACCAGAATGACAGTGGTGTAGAAACTAAGTATCCAGTTTATTCTAAACGTTATCGTCCCGAGATTGAGGATTTACCTTTCGCTGCGATTGGTTCTTATGTTAAAGACTCCAAAGGTCGGACTATCGGTGTTACTCGTACAGGGATTAACTCTGATATCAAACAGCTTACTCAGAAAGTAACTTTTACCCAACCTGTTACTGTAGCAGATGCTGTAGGCGATTATGATGCAGTGACACTGAGGCAACTTCGTAATAGTGGTGGCGGTTCTGGTGGTCCTACCATGAGTGGTATCTCAAACTTTGGTATCGGTGATTTCCATCTTCGTGACAGTCGTGCTTTCATCCCCGCCTTCGAGGTTGTGTCGGATGGGCAGCTTTTGAATCGTGCTGACTACCCAGATTTATGGGCTTATGCACAACTGCTATCCCCAATTGAAGACTCTCTTTGGTTGTCTAATATCTATCAGAGGGGTAGGTATTCTACCGGAAACGGTACAACAACTTTCCGTGTTCCTGACCGAAATGGCATCCAAGAGGGGTCACTGAGAGCTTTATATGGCCGTGGTGATGGTGGTAATTCTGCTGCAAACGGTCAAGTGTTTGATTCTGCTGCACCGAACATCACATATGCGTCCCCTCACACAATGGTAACACTAGCCTCCGCTCCTGGGCAGGTGGCGACTAACGGGGCAATTCAATCAATCACCTCTACAGACGATGTGGCTCCAGTGGGGGCTGGAGGTAAATACATATCCACAAACTTTGACGCATCACGTTCCAGTCCTATTTATGGTCGCTCCACTGAGGAGATTCTGACCCGTAACTTTGTTGGTGTTTGGACTATCCGTGCTCATGGTGGTTTTGTAGCAGCTAATACTTCTTGGTCTGTTATCAACAGGGACAGCGCAGCTCCGGCTTTAAACACTTCTGTAGTTGGTGGTAAGGTGGAATCTAAATACACTAACCCAACCTCCTCTCAATATGCTCGTATGTATATTTCCTCTTCTTGGGGGAGTGTTTGTTCTGCCGTGATTGAAGCACAAGGTACAAGTACTCACGCTTATAAGTTTTATGAGGATGGCACTGTTGATTTTAGGCAGTCTGGTAAGACAAACCCATTCCGCATGTACACACCAACTGGAATTTGGTCTGGACTGACGGATGCGGGGCCAAACAATTTAACCACCGATGGAATGGACAGGGTGGCGATTTCTGGTGGCTCTGACACAGTGGTGCGTGGGTACTCTATTGGAGGATCTAAACCTAATGGTTATCCAACCAAGGTTGGGTATCATATGTATTTGCCGGGAAATGACGCCTTCGGTATCGCCTGTACAACTATTGGAGGAGACAACGGAAGGTTCTGTCGATATTTTTACGACATAGACGGGCAGATATATGGCTCAACTGATTATGGAAACTTTAGCTATACAAAGAGTGGTGTCTCGGATGAAAACCTGAAACATAACATTGTTGATATTGATGCAGAAAGAGCTATTGAAGTAATAAAAGGACTGAAGTTCAAATCCTTTGTTTACAACGATGATGAGAAGAATCGATCTCGTCGTGGTATCATTGCACAGCAGGCAGAGACGGTAGAACCTCTGTATGTCAAGACTCGTAAGTATCCCGGAACTGGAAACGGCGATTCTATGAAAGAGCAGAAAGAGTTAGACACAACTCCTATGCTACTTGACACTATGCAGGTTGTTCAGAATTTGCTGAAGCGTGTAGAAGAGTTAGAAGCTCAACTGGCTGCTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c590c34da0b4e71c53bd01af7b4f6ec4ea93c072fbf996cca53cb90fa538e239
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5986
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Naturally bred epsilon2 phages have an improved host range and effectivity in uropathogenic E. coli over their ancestor phages Saez,D., Loose,M., Mutti,M., Visram,Z., Hitzenhammer,E., Dippel,D., Tisakova,L., Schertler,S., Wittmann,J., Corsini,L. and Wagenlehner,F. 2020-05-19 — GenBank