Protein

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Genbank accession
XXJ62845.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MASINIPGFGYSAVPESPNDGQLYGRRDATWELIALSDGVLEAPADGTEYVRKDLQWVHPTFPTYAATDVTFTATNSQLLSDNVHDALEELYEKYPRKMIFVRSSADFPTPQLLNGVMTHKLEEYEYVIDGDVEISASLGFPGPGLAASLRAVNRSLLTYTGTDALFHDLGAQGTIEVVGQTEFQAPNGDMFNLISGAGGFSFQTQWADRFTNCDRIGEVYCGGLSTLVFNGGTFRNFNQGLIVHDPGFFEVNTFFMFGNNQAGCKYFTIQGESSTGSVNIDTVTFSLGTNETIFDFNQNIQDTIDTINVRSCTLRGPLNGTLFAPGSLTPRDRKFESVGNTIIGNTVHGGLIYLSGNITQTIVTTINTPVKAAGTWTTEDISHFNHDVNGALQSEVIRDISSSVDLSVSVQPASGNGVVIRCYLAKNGVVIPESAKTTTADNGKAGNLSISWHTDISQGDYFELYVENRTGTTPIIVTDATLRIP
Physico‐chemical
properties
protein length:486 AA
molecular weight: 52644,89460 Da
isoelectric point:4,59403
aromaticity:0,09877
hydropathy:-0,13395

Domains

Domains [InterPro]
G3DSA:6.20.230.10
ATT
13–35
G3DSA:6.20.230.10 G3DSA:6.20.230.10
G3DSA:6.20.230.10
ATT
39–60
G3DSA:6.20.230.10 DC_0529
XXJ62845.1
1 486
Architecture
ATT
ATT
STR
ATT 13-35 | ATT 39-62 | STR 63-486
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXJ62845.1
1 486
Domain Start End Length (AA) Confidence
N-terminal 1 119 119 0,9063
Central domain 120 348 230 0,9700
C-terminal 349 486 137 0,9759
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-119
Central
120-348
C-terminal
349-486

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CZ01
[NCBI] 		3435809 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ62845.1 [NCBI]
Genbank nucleotide accession
PV740454.1 [NCBI]
CDS location
range 147768 -> 149228
strand +
CDS
ATGGCAAGTATTAATATACCTGGCTTCGGCTATTCTGCTGTTCCTGAATCACCAAATGACGGTCAGCTATACGGTAGACGAGACGCTACATGGGAGCTAATCGCTTTATCAGATGGTGTTCTAGAAGCACCAGCAGATGGTACAGAATACGTACGAAAGGATTTGCAATGGGTTCACCCAACATTTCCAACATACGCAGCAACAGACGTTACGTTCACTGCAACAAATTCACAGCTTCTTTCAGATAACGTGCATGATGCTCTTGAAGAGCTTTACGAAAAATACCCACGAAAAATGATTTTCGTTCGTTCATCTGCTGATTTTCCAACACCGCAGTTGTTAAATGGCGTGATGACACACAAACTTGAAGAGTACGAATATGTAATCGATGGTGATGTTGAAATTAGCGCATCACTTGGATTCCCGGGTCCTGGACTAGCTGCGTCACTGCGTGCAGTCAATCGCTCATTGTTGACTTATACAGGTACTGATGCATTGTTTCATGATCTAGGCGCTCAGGGAACAATCGAAGTTGTAGGTCAAACTGAGTTTCAAGCACCGAATGGTGATATGTTCAATTTGATTTCTGGGGCGGGTGGGTTCTCGTTTCAGACACAATGGGCAGATAGATTTACAAACTGTGATCGTATAGGTGAAGTTTACTGTGGTGGTCTATCAACGCTTGTATTCAATGGCGGTACATTTAGAAACTTCAATCAAGGATTGATTGTTCATGACCCCGGTTTCTTTGAAGTCAATACGTTCTTTATGTTTGGTAATAACCAAGCAGGGTGTAAATATTTCACAATACAAGGTGAATCTTCTACTGGTTCAGTGAACATCGATACTGTTACGTTCTCATTAGGTACGAATGAAACGATTTTCGACTTTAATCAGAATATTCAAGACACAATCGACACGATTAACGTTCGAAGTTGTACTCTGCGTGGCCCTCTAAACGGTACATTGTTTGCACCGGGAAGTCTAACACCTAGAGATAGAAAATTTGAGTCTGTTGGTAACACAATTATCGGCAACACTGTACATGGCGGCTTGATTTATCTGAGTGGTAATATTACTCAAACAATCGTAACTACAATCAATACGCCTGTGAAAGCAGCAGGTACATGGACTACTGAGGACATTTCTCACTTCAACCATGATGTAAACGGCGCGTTGCAATCTGAAGTAATTCGTGACATATCGAGTAGCGTTGACTTGTCAGTAAGTGTTCAACCAGCATCGGGTAACGGTGTTGTTATTCGTTGTTATCTAGCGAAAAACGGTGTTGTTATTCCTGAGAGTGCTAAGACAACAACTGCGGATAACGGCAAAGCTGGTAACTTGTCAATATCATGGCATACTGATATTTCACAAGGTGATTACTTTGAATTGTATGTTGAAAACCGCACTGGTACAACGCCAATCATCGTAACTGACGCAACATTGCGCATACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ed17ec8f1f017cf5a4b134189848bc5875ebc5159b6b3ffdf5162cebb1179112
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8597
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage CZ01 Zhu,L. and Zhu,D. 2015-12 — GenBank