Protein

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Genbank accession
AEM62912.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADFSQTSFKGGVIAPRLQFNEYESAYHHSIEDAVNFVVTEQGSLITRCGSEEVGLCQDGEVRLFRLPAVDAPSNDVIVEVGNTNIAVWVNDVRQVVANTPSEWRNTIGRIQTAYDTMGDDAGAANTGRLIMVHPALQPKRLYRDNNNVWQFVNMHTGAVPAEWSPSNYPQTVGIFQNRVWYVGSPVHRTYFWATRAGKLEDIAPSTANNPNDPISFVGIMEGTPCWVIASSDVLTIGTTINDYQLAASTGVSVTAATAILRRSSVQGTAAVQGIPAEEQVIFCSRNKSKVYAMNYVREQDNWIPDEMSSQAQHLFTPISSAKGASVRRIAYISDAAKSLWVVLENGHVNYCCFDRTTDTKAWTQLELSGGKVIDIAAAFNPDSDYAYVAVVRSKAINGVQKNYTVLEKISSPRTDWKRADGWVAAQVNQNGDVLNLDRYIGRTAVIFSKYGLEAEVEVNNIGLTHRINGYDPNTVYYVGYKMDSYFRTLTPSNGDMKKSMFGSKMRISKVQLALFDSIEPTVNGEPADDRSTDDIMDARLLDFSSNSGSSNGTRLVDYNPLGWDEDGKMKIAVEQPFLCEVVGLFSVVQSNKV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65550,71990 Da
isoelectric point:5,23353
aromaticity:0,09428
hydropathy:-0,26162

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AEM62912.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 488 488 0,8833
Central domain 489 583 96 0,0722
C-terminal 584 594 10 0,8156
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-488
Central
489-583
C-terminal
584-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phiVC8
[NCBI] 		1076759 Uroviricota > Caudoviricetes > Enhodamvirus >
Host Vibrio cholerae O1
[NCBI] 		127906 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AEM62912.1 [NCBI]
Genbank nucleotide accession
JF712866 [NCBI]
CDS location
range 11164 -> 12948
strand +
CDS
ATGGCAGACTTCAGTCAGACCAGCTTCAAGGGGGGCGTAATTGCTCCCCGACTTCAGTTCAACGAATATGAGTCGGCGTACCACCACTCTATCGAGGATGCCGTTAACTTTGTCGTTACTGAACAAGGAAGCTTAATAACACGATGCGGCTCGGAGGAAGTTGGGTTGTGCCAAGACGGCGAAGTCCGCCTTTTCCGGTTACCGGCTGTTGACGCTCCCTCTAATGACGTTATTGTAGAGGTAGGCAATACTAACATAGCTGTTTGGGTTAATGATGTGCGTCAGGTGGTGGCCAATACTCCCAGCGAATGGCGCAACACGATTGGCCGAATCCAAACAGCATACGATACCATGGGGGATGATGCAGGTGCAGCCAACACAGGACGCCTGATTATGGTTCATCCCGCATTGCAGCCCAAACGGCTATACCGCGACAACAACAACGTATGGCAATTCGTGAACATGCACACAGGCGCGGTTCCTGCTGAGTGGTCTCCCAGTAACTATCCTCAGACAGTGGGCATTTTCCAAAATAGAGTTTGGTATGTGGGTTCCCCCGTTCATCGGACTTATTTTTGGGCTACACGAGCAGGTAAATTGGAAGACATCGCGCCTAGCACGGCCAACAATCCCAATGACCCCATTAGCTTCGTGGGCATTATGGAGGGGACGCCATGTTGGGTTATCGCATCCTCCGACGTATTGACCATTGGAACAACAATAAATGACTACCAGTTAGCTGCATCTACTGGCGTGTCAGTCACGGCGGCAACGGCCATATTGCGTCGTTCGTCTGTTCAAGGGACGGCGGCAGTCCAAGGAATCCCTGCGGAAGAGCAAGTTATTTTCTGCTCCCGCAACAAGTCCAAGGTGTACGCCATGAACTACGTCAGGGAGCAAGATAACTGGATTCCTGACGAAATGTCGAGCCAAGCGCAGCACTTATTTACGCCGATTTCGTCTGCGAAAGGTGCTAGTGTCCGTAGAATCGCCTACATCTCGGATGCGGCTAAGTCTCTTTGGGTTGTGTTAGAAAACGGCCATGTCAACTATTGTTGTTTTGACCGCACGACGGACACCAAAGCATGGACTCAACTAGAGCTTTCAGGCGGAAAGGTGATTGACATCGCCGCCGCATTCAACCCAGACTCTGATTACGCTTACGTTGCTGTGGTCAGAAGCAAGGCGATAAACGGAGTTCAAAAGAACTACACTGTACTGGAGAAAATCTCGTCGCCTCGTACTGATTGGAAGAGAGCGGATGGGTGGGTCGCGGCACAAGTCAACCAAAACGGCGACGTGCTGAACTTAGACAGATACATCGGCAGAACAGCAGTAATCTTCAGTAAATATGGGCTAGAAGCCGAGGTCGAAGTAAACAATATTGGTTTGACGCACAGAATCAACGGCTATGACCCGAACACCGTGTACTACGTGGGATATAAGATGGACAGTTACTTTCGCACGTTGACCCCCTCAAACGGAGACATGAAAAAGTCGATGTTTGGGAGCAAAATGCGGATTAGCAAGGTGCAGTTGGCTCTTTTCGATAGCATAGAGCCGACCGTAAACGGCGAACCTGCCGACGACCGCAGCACGGACGACATTATGGATGCGAGATTGTTAGACTTTTCTTCTAACTCAGGCAGTAGCAACGGTACAAGACTAGTCGATTACAACCCTTTGGGCTGGGATGAAGACGGGAAAATGAAAATAGCTGTCGAACAGCCTTTTTTGTGTGAAGTAGTCGGCTTGTTCTCAGTGGTTCAATCTAATAAGGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
367490e82155855c2929e80279d71ba54c4205ea2dd091422581146a51a274c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8615
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic characterization of OVC8 lytic phage for Vibrio cholerae O1 Solis-Sanchez,A., Hernandez-Chinas,U., Navarro-Ocana,A., De la Mora,J., Xicohtencatl-Cortes,J. and Eslava-Campos,C. 2016 27000701 GenBank