Protein

View in Explore
Genbank accession
AVQ09852.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MALKTKIIVQQILNIDDTTTTASKYPKYTVVLGNSISSITAGELTSAVEASAASAAAAKGSEIAAKDSENKAKDSEIMAGIYADSSQTSATQSAASAAESEKQARLSQKSADASATSAEESKGFRDSTELAAQNAENSRRLAEQAKSAAQAAQTAAETAKTGAETAKTGADAAATTAGEHAAAAKQSELNAKTSETNAASSATEAGDKAIDATTEADRAKAEADRATQIVDSKLDKVDISGFIKVYKTKAEADADVGSRVLGEKILVWNQTDSKYGWYKVTGTAEAPVLELAEIEQKLVSINNVRADDAGNVQITLPGGNPSLWLGEVTWFPYDKDSGVGYPGVLPADGREVLRVDYPDTWEAIEAGLIPSVSEAEWQAGAILYFSTGDGSTTFRLPDMMQGQAFRAPIKGEENGGAIKEQIPYITTVNGIGPADDTGAIKLPYVAMVNGAIIPDENGNLALGNVVTKNVWNGTDGEVLLRGAFGLGGTGITLNEPDLVSFFKAMRAFGSGYYRNDIAVDGLPAYSAGFYSRTADTNSFICSGYGSAVVFVAAINDAGLDSENPVVHTNILYGTVNKPDLNGDTNGVLSVGKGGTGATTVSAAKKALEVGGVFCTDSPADDAFNSLQSPAGVHEFRLTNGGIWGVWKKGEETVAALPIGSGGTGATDKVAARDNFELGYHNTPRFTGVDLSNPESIPYSGILNLNRLKESDQNVITQGRIYHEMQSDLAKITLHINNTLNGANRYIQFVENGDLTGLQNVHAVNYLASGYVTAQGWIKGGEKIYIQQTGGGNREISMAVPTPNNDPGAGSWVNLLQGNWYNGYWQVGGVRGSGPDLDCLRIGVNNSGTDWKEFNFYNSYGGHITAPKGFRGQCTQGYWGLEWDYMGAPFHAESVANNDGGWSPIVSGGSLSAGGYHLRIGLGCISNGNAAWPDAALKLNGDGQYHRSFNFRTNGSVYTWGNDPWGGNYDFAMNPSSDRDIKRDINYDDGLASYENIKQFKPTTFIYKLDKYNRVRRGVIAQDLYKIDPEYVKLVPGSPIIETPEHHCCDEKTENVESKIIDYEDDTLALDINPIAIDTALAVRYLSLKFEESQEELKSVKAELAELKALVATLVNK
Physico‐chemical
properties
protein length:1116 AA
molecular weight: 118782,06930 Da
isoelectric point:4,81434
aromaticity:0,08244
hydropathy:-0,34597

Domains

Domains [InterPro]
DC_0608
ATT
2–592
DC_0608 IPR030392
Coil
Unmapped
125–152
Coil DC_0195
IPR030392
CHP
976–1032
IPR030392 Coil
AVQ09852.1
1 1116
Architecture
ATT
STR
ATT 2-592 | STR 593-1116
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_PHB06
[NCBI] 		2136178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVQ09852.1 [NCBI]
Genbank nucleotide accession
MH102285.1 [NCBI]
CDS location
range 16540 -> 19890
strand +
CDS
ATGGCACTTAAAACTAAAATTATTGTACAGCAGATTCTGAACATAGATGACACTACAACTACTGCTAGTAAGTATCCTAAATATACAGTAGTTTTAGGAAATTCTATTAGCTCTATTACTGCTGGTGAATTAACTTCTGCTGTAGAAGCCTCCGCTGCTTCTGCGGCAGCAGCAAAAGGTTCTGAAATTGCTGCTAAAGATTCTGAGAATAAAGCAAAAGACTCCGAAATTATGGCGGGTATCTATGCAGATTCCTCCCAAACATCAGCTACTCAATCCGCAGCTTCAGCAGCAGAATCTGAGAAACAAGCTAGATTATCTCAGAAGAGTGCAGATGCTTCTGCTACATCAGCGGAAGAGTCTAAAGGGTTTAGAGATTCTACTGAACTAGCTGCTCAGAATGCTGAGAACAGTCGTAGACTTGCTGAACAAGCTAAGTCTGCTGCGCAAGCTGCTCAAACAGCGGCTGAAACTGCTAAGACTGGTGCTGAAACAGCAAAAACTGGAGCAGATGCTGCTGCTACAACTGCTGGAGAACACGCTGCTGCTGCGAAACAATCAGAATTAAATGCTAAAACTTCTGAGACTAATGCTGCTAGCTCTGCTACAGAAGCTGGGGACAAAGCTATTGATGCTACTACTGAAGCAGATCGTGCTAAAGCTGAAGCAGATCGTGCAACTCAGATCGTTGATAGTAAACTTGATAAGGTAGATATTTCTGGTTTCATCAAAGTTTATAAGACCAAAGCAGAAGCCGATGCTGATGTTGGAAGTCGTGTACTAGGGGAGAAGATCCTAGTATGGAATCAAACTGATTCAAAATATGGGTGGTATAAGGTCACTGGTACTGCCGAAGCTCCTGTTCTAGAATTAGCAGAAATAGAGCAAAAGCTAGTTTCTATTAATAACGTTCGTGCAGATGACGCGGGTAACGTACAGATTACTCTTCCTGGTGGTAACCCCTCTTTATGGCTAGGTGAAGTTACTTGGTTCCCTTATGATAAAGATTCAGGTGTTGGCTACCCAGGTGTTCTTCCTGCTGATGGTCGTGAAGTTCTTCGTGTAGACTATCCAGATACTTGGGAAGCTATTGAAGCTGGTCTAATTCCTTCTGTTTCAGAAGCTGAATGGCAAGCCGGTGCAATCCTATACTTCTCTACTGGTGATGGTTCTACAACCTTCCGTTTACCAGATATGATGCAAGGGCAGGCTTTCCGTGCACCTATTAAGGGAGAAGAAAATGGTGGTGCTATCAAGGAACAAATCCCTTATATCACTACTGTGAATGGAATTGGTCCTGCTGACGATACTGGAGCTATTAAGCTCCCTTACGTGGCGATGGTTAATGGAGCTATTATACCAGATGAGAACGGGAACCTAGCACTAGGTAACGTTGTTACTAAGAATGTTTGGAATGGTACTGATGGAGAAGTTCTACTTCGCGGTGCTTTTGGCTTAGGTGGTACTGGTATTACATTAAATGAGCCAGATCTAGTATCCTTCTTTAAAGCTATGAGAGCCTTTGGTTCTGGGTATTATCGCAATGATATTGCAGTTGATGGCTTGCCCGCGTATTCTGCAGGTTTCTACTCTAGAACAGCAGATACTAACTCATTTATCTGTTCTGGGTATGGCAGTGCCGTAGTATTTGTAGCTGCAATCAATGATGCTGGTTTAGATAGTGAAAACCCTGTTGTTCATACTAATATTCTTTATGGTACTGTTAATAAGCCAGATCTAAATGGTGATACTAATGGAGTTCTTAGTGTTGGTAAAGGTGGTACTGGAGCTACCACAGTTAGTGCTGCTAAGAAAGCTTTAGAAGTTGGTGGAGTTTTCTGTACTGATAGTCCCGCTGATGATGCTTTCAATTCCCTCCAGAGCCCTGCTGGTGTTCATGAGTTTAGACTAACTAATGGTGGAATATGGGGTGTCTGGAAGAAGGGTGAAGAAACGGTAGCTGCGTTGCCTATAGGCTCTGGAGGTACGGGAGCTACTGATAAAGTTGCTGCACGTGATAACTTTGAATTGGGGTATCATAATACTCCTAGATTTACTGGGGTAGATCTATCTAATCCCGAAAGCATACCCTATAGTGGTATCCTTAATCTAAACAGGCTAAAGGAATCTGATCAAAATGTTATTACTCAGGGTAGAATCTATCATGAGATGCAATCAGATTTGGCTAAAATTACCCTTCATATTAACAATACTTTAAATGGTGCAAACCGTTATATACAGTTTGTAGAAAATGGTGATTTAACTGGGCTACAGAATGTACATGCAGTTAACTACCTTGCAAGTGGTTATGTTACAGCCCAGGGATGGATCAAAGGCGGGGAAAAAATCTATATACAGCAAACAGGTGGGGGCAACAGAGAAATTAGTATGGCTGTACCTACTCCTAATAATGACCCTGGTGCTGGTTCTTGGGTTAACTTACTACAGGGTAACTGGTATAACGGTTACTGGCAAGTAGGTGGTGTCCGTGGTAGTGGACCGGACTTAGACTGCCTCCGTATTGGAGTTAACAACTCTGGTACTGATTGGAAGGAATTCAATTTCTACAACTCCTATGGTGGCCATATAACTGCTCCAAAAGGTTTTCGTGGTCAGTGTACTCAAGGATATTGGGGCTTAGAGTGGGATTACATGGGCGCCCCATTTCATGCAGAGTCTGTAGCAAATAATGATGGTGGTTGGTCTCCTATAGTATCGGGAGGTTCTTTATCCGCTGGTGGATATCATTTAAGAATAGGCCTTGGCTGTATCTCTAATGGTAACGCTGCATGGCCTGACGCTGCTCTTAAGTTAAATGGGGATGGCCAGTACCACCGTTCATTCAACTTTAGAACAAACGGTAGCGTGTATACTTGGGGTAATGATCCTTGGGGAGGTAACTATGACTTTGCTATGAACCCTTCTTCAGATAGAGATATCAAAAGAGATATTAATTATGATGATGGGTTAGCCTCCTATGAGAATATAAAGCAATTTAAACCTACCACATTTATCTATAAACTAGATAAGTATAATCGTGTACGCCGTGGTGTTATTGCTCAAGATCTTTATAAAATTGACCCTGAGTACGTAAAACTGGTTCCTGGTTCCCCTATCATAGAAACTCCAGAACATCATTGCTGTGACGAAAAAACTGAGAACGTAGAAAGTAAGATCATTGACTATGAGGATGATACTTTAGCTCTGGATATTAACCCGATCGCTATTGATACGGCATTAGCAGTTCGTTACTTGTCTCTAAAGTTCGAAGAGTCCCAGGAAGAACTGAAGTCCGTTAAGGCAGAACTGGCAGAGTTAAAAGCTCTAGTAGCCACTCTGGTAAATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
825ee5c4ea0db6c430b111dfc4e0e085fa1040b2264c9a607f798626af188df1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5713
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three Siphoviridae Salmonella enterica serovar enteritidis bacteriophage show promising potential for phage therapy Chen,Y., Sun,E., Wu,B. and Song,J. 2018-11 — GenBank