Protein

View in Explore
Genbank accession
YP_006966.1 [GenBank]
Protein name
tail protein Pb3
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
Protein sequence
MKKILDSAKNYLNTHDKLKTACLIALELPSSSGSAATYIYLTDYFRDVTYNGILYRSGKVKSISSHKQNRQLSIGSLSFTITGTAEDEVLKLVQNGVSFLDRGITIHQAIINEEGNILPVDPDTDGPLLFFRGRITGGGIKDNVNTSGIGTSVITWNCSNQFYDFDRVNGRYTDDASHRGLEVVNGTLQPSNGAKRPEYQEDYGFFHSNKSTTILAKYQVKEERYKLQSKKKLFGLSRSYSLKKYYETVTKEVDLDFNLAAKFIPVVYGVQKIPGIPIFADTELNNPNIVYVVYAFAEGEIDGFLDFYIGDSPMICFDETDSDTRTCFGRKKIVGDTMHRLAAGTSTSQPSVHGQEYKYNDGNGDIRIWTFHGKPDQTAAQVLVDIAKKKGFYLQNQNGNGPEYWDSRYKLLDTAYAIVRFTINENRTEIPEISAEVQGKKVKVYNSDGTIKADKTSLNGIWQLMDYLTSDRYGADITLDQFPLQKVISEAKILDIIDESYQTSWQPYWRYVGWNDPLSENRQIVQLNTILDTSESVFKNVQGILESFGGAINNLSGEYRITVEKYSTNPLRINFLDTYGDLDLSDTTGRNKFNSVQASLVDPALSWKTNSITFYNSKFKEQDKGLDKKLQLSFANITNYYTARSYADRELKKSRYSRTLSFSVPYKFIGIEPNDPIAFTYERYGWKDKFFLVDEVENTRDGKINLVLQEYGEDVFINSEQVDNSGNDIPDISNNVLPPRDFKYTPTPGGVVGAIGKNGELSWLPSLTNNVVYYSIAHSGHVNPYIVQQLENNPNERMIQEIIGEPAGLAIFELRAVDINGRRSSPVTLSVDLNSAKNLSVVSNFRVVNTASGDVTEFVGPDVKLAWDKIPEEEIIPEIYYTLEIYDSQDRMLRSVRIEDVYTYDYLLTYNKADFALLNSGALGINRKLRFRIRAEGENGEQSVGWATI
Physico‐chemical
properties
protein length:949 AA
molecular weight: 107164,75280 Da
isoelectric point:5,32345
aromaticity:0,11275
hydropathy:-0,44215

Domains

Domains [InterPro]
DC_0187
STR
230–946
DC_0187
IPR032876
ATT
601–686
IPR032876
YP_006966.1
1 949
Architecture
STR
ATT
STR
STR 230-600 | ATT 601-686 | STR 687-946 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006966.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9462
Central domain 313 525 214 0,3791
C-terminal 526 949 423 0,0025
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-525
C-terminal
526-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006966.1 [NCBI]
Genbank nucleotide accession
NC_005859 [NCBI]
CDS location
range 88551 -> 91400
strand -
CDS
ATGAAGAAAATACTCGATAGTGCTAAAAATTACCTGAATACCCATGATAAATTAAAGACAGCATGTCTTATAGCTCTTGAATTGCCAAGTTCATCTGGTTCCGCAGCTACTTATATCTACTTAACAGATTATTTTAGAGATGTTACATATAATGGTATTTTGTACAGATCAGGTAAAGTAAAAAGTATAAGCTCCCATAAACAGAACCGTCAATTATCTATTGGTAGTCTATCCTTCACAATAACTGGTACTGCCGAAGATGAGGTACTAAAGCTAGTTCAAAATGGAGTATCTTTCCTAGATAGGGGTATAACTATCCATCAGGCAATAATCAATGAAGAAGGAAATATTCTTCCTGTAGATCCTGATACAGATGGCCCTTTATTATTCTTCCGCGGTAGAATTACCGGAGGCGGAATAAAAGATAACGTTAATACTTCCGGAATAGGTACATCAGTTATTACTTGGAACTGTTCTAATCAATTTTATGATTTTGATAGAGTAAACGGCAGGTATACAGATGATGCATCTCATAGAGGTCTTGAAGTTGTTAATGGAACTCTTCAGCCATCAAATGGGGCTAAACGTCCTGAGTACCAAGAAGACTATGGATTCTTCCACTCTAATAAAAGTACAACTATTCTAGCTAAATACCAAGTTAAAGAAGAACGATATAAATTACAGTCTAAGAAAAAGTTATTTGGTCTGTCTAGAAGCTACAGCCTTAAAAAATACTATGAGACTGTAACTAAAGAAGTTGACCTAGACTTTAACTTAGCAGCTAAATTTATACCTGTAGTATATGGTGTTCAGAAAATTCCTGGTATACCTATTTTTGCAGATACGGAACTAAATAACCCTAATATAGTATACGTAGTATATGCTTTTGCAGAAGGTGAGATAGATGGATTTCTAGATTTCTATATCGGAGATAGCCCTATGATATGTTTTGATGAAACAGACTCCGATACTAGAACTTGTTTTGGACGTAAAAAGATAGTCGGTGATACAATGCACCGTCTAGCTGCTGGTACAAGTACATCTCAACCTTCTGTTCATGGACAAGAATATAAGTATAACGATGGTAATGGGGATATAAGAATCTGGACCTTTCATGGAAAACCAGACCAGACTGCTGCACAAGTACTTGTAGACATTGCTAAGAAAAAAGGATTTTATCTACAGAATCAGAACGGCAACGGACCGGAATACTGGGATTCTCGTTATAAGTTATTGGATACAGCTTATGCTATAGTTAGATTTACTATTAATGAGAATAGAACTGAAATTCCTGAAATTAGCGCAGAAGTGCAGGGTAAGAAAGTTAAAGTATACAACTCTGATGGTACTATAAAAGCAGATAAGACTAGCTTAAATGGTATCTGGCAACTTATGGATTACCTGACTTCAGATCGTTATGGTGCTGATATTACTTTAGATCAGTTCCCGCTACAAAAAGTAATATCAGAGGCAAAAATACTTGATATAATTGACGAGTCCTACCAGACTAGTTGGCAGCCCTACTGGCGTTACGTTGGGTGGAATGACCCCCTATCTGAGAATCGTCAAATAGTTCAACTAAATACTATACTGGATACTTCTGAATCAGTTTTTAAAAACGTTCAAGGTATATTAGAATCCTTTGGTGGAGCTATAAATAACCTATCAGGTGAGTATAGAATAACAGTAGAAAAATATTCTACGAATCCTCTGAGAATAAATTTTCTAGATACTTATGGAGATTTAGACTTATCTGATACTACTGGTAGAAATAAGTTTAACTCAGTACAGGCATCCTTAGTAGACCCTGCACTAAGCTGGAAAACAAACTCTATTACGTTCTATAACTCGAAGTTTAAAGAGCAGGATAAAGGTCTTGACAAGAAACTTCAGTTATCTTTTGCTAATATTACTAATTACTACACTGCTAGGAGTTACGCAGATAGGGAACTTAAGAAATCTAGATACTCCCGTACTTTAAGTTTTTCCGTACCCTATAAATTTATAGGTATAGAGCCTAACGATCCTATTGCTTTCACATATGAACGTTACGGCTGGAAGGACAAATTCTTCCTGGTTGACGAAGTAGAAAATACTCGTGATGGTAAAATTAATCTAGTCCTCCAAGAGTATGGAGAAGATGTATTTATTAATTCCGAACAGGTAGATAATAGTGGTAATGATATTCCTGATATTAGTAATAACGTTCTACCGCCTAGAGACTTTAAGTACACCCCTACTCCAGGTGGCGTAGTTGGTGCTATAGGTAAGAATGGTGAGCTATCCTGGCTTCCTAGTCTTACAAATAACGTAGTATACTATTCTATTGCACATTCTGGACATGTTAATCCCTACATAGTTCAACAACTGGAAAATAATCCTAATGAGAGAATGATTCAGGAGATTATAGGGGAGCCTGCTGGTTTAGCTATTTTTGAGCTACGCGCAGTAGATATTAATGGTAGACGTAGTTCTCCAGTTACACTATCTGTAGATCTTAACTCCGCAAAGAACTTAAGCGTAGTTAGTAACTTTAGGGTTGTTAATACTGCTTCAGGAGACGTAACTGAATTTGTTGGACCGGATGTTAAACTTGCTTGGGATAAGATTCCAGAGGAAGAAATAATTCCTGAAATTTACTATACTTTGGAAATTTATGATTCTCAAGATAGAATGCTTCGTAGTGTTAGAATAGAAGATGTCTATACCTATGATTATCTATTAACATATAATAAGGCGGATTTTGCTTTACTAAACTCGGGGGCTCTAGGTATCAATCGTAAATTACGGTTTAGAATACGAGCTGAAGGGGAAAACGGAGAGCAATCTGTTGGTTGGGCTACTATTTAA

Genome Context

Genome Context

Tertiary structure

1 / 7
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Structure of two promoters and a terminator of transcription from the region of bacteriophage T5 early genes D10-D15 Kaliman,A.V., Krutilina,A.I. and Kryukov,V.M. 1987 — GenBank
The nucleotide sequence of bacteriophage T5 RNAI Kryukov,V.M., Shlyapnikov,M.G., Kazantsev,S.I., Kaliman,A.V., Ksenzenko,V.N. and Bayev,A.A. 1982 — GenBank
Bacteriophage T5 complete genome Ksenzenko,V.N., Kaliman,A.V., Krutilina,A.I. and Shlyapnikov,M.G. 1982-05 — GenBank