Protein

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Genbank accession
YP_024425.1 [GenBank]
Protein name
outer capsid protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MAVYIQGQEVLNIVVHVPNSAPTDLGEFRMAEQLAAKQPQITAQPVGGSIYDSQTLGLSIAANVFGSTAAYQWLVDGAPIQGANSTSFTFVPSGLGTFDVTCEIKAFGPMVTSEVASVTVEQTPVDLTWQVLPAGYGLPSNVSGLVGLNAIGSDGSLVVGAMGMEGMRSTDKGLTWSYIGNGFGTGQTSGTISAICVVGNVVVVGGIAGSNIGVAGRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGMPTNTSIVAIGVSDTAIVVGGNNGNCAISRNDGVTWSALPLNFGVPIGSGIRDRSIAGASNGTFLVGLSGSPISGNNGYLALSYDDGVTWQQPPRYLGIPNAGYGALVNTIRNIDILTFLVGFTDKRGVRAVR
Physico‐chemical
properties
protein length:460 AA
molecular weight: 46834,21600 Da
isoelectric point:5,19391
aromaticity:0,07609
hydropathy:0,25674

Domains

Domains [InterPro]
DC_1032
ATT
1–81
DC_1032 IPR015943 G3DSA:2.120.10.10
SSF110296
STR
128–431
SSF110296
IPR058667
ENZ
174–429
IPR058667
cd15482
ENZ
214–435
cd15482
YP_024425.1
1 460
Architecture
ATT
STR
ATT 1-81 | STR 112-440 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_024425.1
1 460
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9922
Central domain 132 449 319 0,8816
C-terminal 450 460 10 0,1924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-449
C-terminal
450-460

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP2
[NCBI] 		260372 Uroviricota > Caudoviricetes > Enhodamvirus >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_024425.1 [NCBI]
Genbank nucleotide accession
NC_005879 [NCBI]
CDS location
range 20439 -> 21821
strand +
CDS
ATGGCGGTATATATTCAAGGTCAAGAAGTGCTGAACATTGTTGTCCACGTGCCTAATTCTGCTCCGACCGATTTGGGTGAGTTTCGCATGGCGGAACAACTAGCAGCGAAGCAACCCCAAATCACAGCGCAGCCTGTGGGCGGTTCTATTTACGATTCGCAGACTTTGGGTTTGTCCATAGCGGCCAATGTGTTTGGCTCAACGGCTGCATACCAGTGGTTGGTCGACGGCGCTCCAATCCAAGGGGCTAACTCTACGTCCTTTACCTTCGTTCCGTCAGGGTTGGGTACTTTTGATGTGACGTGTGAGATAAAAGCTTTCGGCCCAATGGTCACGAGCGAAGTAGCCTCGGTTACAGTCGAGCAAACTCCTGTTGATTTGACTTGGCAAGTCTTGCCTGCAGGGTATGGTCTACCAAGCAATGTCAGCGGACTCGTTGGGCTGAACGCCATTGGTTCTGATGGCTCTTTAGTAGTAGGAGCCATGGGCATGGAAGGCATGCGCAGCACGGACAAAGGATTGACGTGGTCGTATATTGGCAACGGGTTCGGCACTGGACAAACATCAGGCACTATCTCGGCCATTTGCGTGGTAGGGAATGTTGTGGTGGTGGGCGGAATTGCAGGCAGCAATATTGGGGTAGCAGGTCGGTCAACCAACGGAGGTGTTAGTTGGACCAAACTTCCCGATTTCCTGAACAGCGGAGCCACGGCTAGTGCCATCAACAAGATTTTGCACGTGGGTGGCAACAAGTTGATAGCGCTATTGGGGAGTGGATACGCAGCCGTGAGCAACGATTTGGGAGCCACTTGGTCTGCGCTGCCTCGTTGGCTGAATAGCGGCGGCTCGGACAACAACACGTCCTTTTTTGACGGAGCGGTTACGGCAACAGGAGCTATAATTGCAGTAGGCCAAAATGGCTTTGCGTCAATAAGCCGGAACGGAGGCGTTACTTGGTCCGCACTTCCTCGATACTTAGGCATGCCGACCAACACTTCCATTGTCGCTATTGGTGTGAGCGACACTGCCATCGTAGTAGGAGGCAACAACGGTAACTGCGCTATCAGCAGGAATGACGGTGTTACTTGGTCTGCTCTGCCTCTGAATTTTGGTGTGCCGATAGGGTCAGGTATCCGCGACCGTTCAATTGCGGGAGCTAGCAACGGCACATTCTTAGTGGGGCTGAGTGGAAGCCCGATATCCGGCAACAACGGCTATTTGGCGTTGAGCTATGATGATGGCGTCACTTGGCAACAACCACCGAGGTATTTGGGTATCCCAAATGCAGGGTATGGCGCGTTGGTCAACACCATCAGAAATATTGATATCTTAACTTTCTTGGTGGGCTTTACTGACAAGAGAGGAGTGAGAGCGGTGAGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f1f2effc666462398ea695e513d4ccf5477f906e7260cbf0b8155a1101365e76
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8052
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio cholerae phage VP2 complete genome Wang,D., Kan,B., Li,Y., Liu,Z., Gao,S., Liu,Y., Liang,W., Zhang,L., Yan,M., Li,W., Liu,G., Liu,Y., Li,J., Diao,B., Zhu,Z. and Qiu,H. — — GenBank