Protein

View in Explore
Genbank accession
YAF80308.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALYRTGTAAMDAQGVITGTGTKWREPLSLIRTGATIAFLTTPLKLAVISDIVSDTEMKAIQTDGEPVANVNYVILLNDSLTVDGMAQDVAETLRYYQSKETVIEEAIEFFKNFDLKTFQDLVNNVNADAQQVAIDKAATEQLKNETNQIKADTNAIKTQTQQIKDSAVSEIGEIRNDALDARDAAENAQFAAEQSNIAAGNAKQGAETARDDARQWAQQVNPENLLHKDQNLSDLSNKESAKSNLGLDRFKQSEGETMMYPATVSPYRITIRPNGEWGTWRDDTGSWEALKIEAGGTGSKNEKDARRALNVPSAYKNIPDGTNILDWFIENNESGVFSSGENVINKPDDGHGWWTYNFKIHLRNQEGKPEFGVVEATSAANIMYIIVLTNGQWPHGWFKIARENDNVQFRDVKVTQYDTGFSGHLDLYNIQNNNPKGLTQLYNEFQDGVLKTTLRSANLENGKNSYLQWDENGSLWNVNNFISNEINFGYNNVRKLNTRHGTLLVDGTATPYYYTFGNPDGRRSVSEVGTVEDGWIFYGQVNRDLSKQLDVNGVVNAHAFNQGSDRDLKENIEVIDNAIERIRGIGGYTYILKEDGMPYAGVIAQEVRNSLPEASGSFTKYVDLQGPTKDGSALQGEERFYSVDYSGITALLVQACKELDEKITKLEHENKLLKESLSSVDEMRGEIEYMKSLLNKAK
Physico‐chemical
properties
protein length:699 AA
molecular weight: 77892,37400 Da
isoelectric point:4,84646
aromaticity:0,08584
hydropathy:-0,59070

Domains

Domains [InterPro]
DC_0313
STR
1–698
DC_0313
IPR030392
CHP
565–671
IPR030392
IPR030392
CHP
565–615
IPR030392 Coil
YAF80308.1
1 699
Architecture
STR
STR 1-698 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-03
[NCBI] 		3459907 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF80308.1 [NCBI]
Genbank nucleotide accession
PX104383.1 [NCBI]
CDS location
range 22970 -> 25069
strand -
CDS
ATGGCTTTATATCGCACTGGTACTGCTGCAATGGACGCGCAAGGAGTTATCACTGGTACTGGCACAAAATGGCGTGAGCCGCTTTCTCTTATTCGCACTGGAGCAACAATCGCCTTTTTAACAACACCTTTAAAACTGGCGGTTATTAGCGATATTGTAAGCGACACGGAAATGAAAGCGATCCAGACTGACGGCGAGCCAGTAGCAAACGTAAATTATGTGATCCTTTTGAATGATTCTCTAACTGTAGATGGTATGGCGCAAGATGTAGCGGAAACGCTGCGTTATTATCAAAGCAAAGAAACTGTTATCGAGGAAGCAATTGAATTCTTCAAAAACTTTGATCTTAAAACTTTTCAGGATCTGGTTAATAATGTTAATGCTGATGCGCAACAGGTAGCCATTGATAAGGCGGCGACTGAACAACTAAAAAATGAAACCAATCAGATCAAAGCAGACACTAACGCAATAAAAACGCAAACTCAACAGATTAAGGATAGTGCTGTTTCTGAAATTGGCGAAATTAGAAATGATGCTCTTGATGCGCGTGATGCCGCTGAAAACGCACAATTCGCTGCTGAACAATCTAACATTGCAGCCGGAAATGCTAAACAAGGTGCTGAAACTGCGCGTGATGATGCTCGCCAGTGGGCGCAACAGGTTAACCCTGAAAATCTTCTTCATAAAGATCAGAATCTATCTGATTTATCAAATAAGGAGTCTGCAAAGAGTAATCTTGGCTTAGATCGCTTTAAACAGTCCGAAGGCGAAACCATGATGTATCCAGCTACCGTTTCTCCTTATCGTATTACAATACGACCAAACGGTGAATGGGGAACATGGCGTGATGATACTGGATCGTGGGAAGCGTTAAAAATTGAGGCCGGAGGAACAGGATCTAAAAATGAAAAAGACGCCAGGCGTGCACTTAATGTTCCATCAGCTTATAAAAATATTCCAGACGGAACTAATATTCTTGATTGGTTTATAGAAAACAATGAATCAGGGGTTTTCTCATCTGGAGAAAATGTAATTAATAAACCTGACGACGGTCATGGTTGGTGGACTTATAATTTTAAGATACATCTTAGGAATCAAGAAGGAAAACCCGAGTTTGGAGTTGTAGAAGCAACGTCGGCAGCAAATATCATGTACATCATTGTGCTTACAAATGGTCAATGGCCGCATGGATGGTTTAAAATTGCTCGTGAGAATGATAATGTTCAATTTAGAGACGTGAAAGTAACACAATATGATACGGGGTTTAGCGGACATCTTGATCTTTATAACATACAAAACAATAATCCAAAAGGTCTTACGCAACTTTATAATGAATTTCAAGACGGTGTGCTAAAGACTACCCTTCGAAGTGCAAACCTAGAAAATGGAAAGAACTCGTATTTGCAGTGGGATGAAAACGGATCTCTTTGGAATGTTAATAATTTTATTTCCAATGAAATTAATTTTGGATACAACAATGTTAGAAAGCTTAATACTAGACATGGAACCTTGCTTGTTGATGGTACGGCAACACCATATTATTATACATTTGGTAATCCTGATGGTCGACGTAGTGTATCCGAGGTAGGAACTGTAGAAGATGGATGGATATTTTACGGGCAAGTAAATAGAGATCTATCTAAGCAACTTGACGTTAATGGAGTTGTAAATGCTCATGCATTTAATCAAGGATCTGATAGAGATCTAAAAGAAAATATAGAGGTTATTGATAATGCTATAGAAAGAATAAGAGGTATTGGAGGATATACTTATATTCTAAAAGAAGATGGTATGCCTTACGCTGGCGTTATAGCTCAGGAGGTTAGAAACTCATTGCCAGAAGCTTCTGGATCTTTTACCAAATATGTTGATTTGCAAGGGCCAACAAAAGACGGTTCTGCACTTCAAGGAGAGGAAAGATTCTATTCTGTTGACTATAGCGGTATAACTGCTCTACTTGTCCAGGCTTGCAAGGAGTTGGATGAAAAGATTACAAAACTTGAACATGAAAATAAGTTGCTTAAAGAATCGCTATCTTCTGTTGATGAAATGAGAGGTGAAATTGAATACATGAAGTCACTTTTAAATAAAGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c4902e0f380ca7828edbd70afac34f01b29da904648e7d9bf4ff2f2ef60629a5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8068
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank