Protein

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Genbank accession
YP_010845208.1 [GenBank]
Protein name
putative pectin lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MRGYSFSELVKLSEGALKRNGDTATGNLTAPKFLLSSPQATEPNSVVRKDFFDSTVAGLNDENDTMKLGIWEAMRRSYAEAGYNLVDGSFEAGGTLVSANDVLLHEASGKAFTGPTGTVAAETNPASGGFVDRSNELFNEDLVSSLATRTNLDTSLLDADGVVEAMSISANRGFLPTKYSSQWREPLSGAAYPQALAESENYYFITEDDGTGSPYNSKIYRINKSTGVKSAGSPYIASHGQGIGVISDDVVFIGGSTDSKIATYSFVTGLVTETTCTGLYKDFPFCYDKDSDRIYQLQDVNATSDFIVRLSILDRVNGFIGDTSIPLMIVKGGYPQGLAYSGGQLYVTCGGPWTSSTGGAWNDYWTMYKISTSGVVLDYMVFRRSSMGAPLGLPSLTQHEPQGISIRDGKISLLQLFGGGSGVIKSIYKEDQAGLLVRSIPRNKFHLYNGLNDVGINIATLSVGSAIKTIVAGMSDGTSLTFSFANEAWVSNDIGFQFGVCTVTRVNGFRAYAIAVESSSDITANTTPRVAIISVFGATQSKPKLIAGESNTLSAGYTGPGTPAVAGPITITNASLVNNMMFHVSDTVSGSSFVSKFSRAEINGYIASGASITLKSNLSGAIVMTFTVSGVNISSVSGTPYLRYVFTN
Physico‐chemical
properties
protein length:648 AA
molecular weight: 68683,13050 Da
isoelectric point:5,20102
aromaticity:0,09722
hydropathy:-0,02207

Domains

Domains [InterPro]
DC_0018
ATT
3–264
DC_0018 DC_1710
SSF63825
STR
184–352
SSF63825
YP_010845208.1
1 648
Architecture
ATT
STR
RBD
ATT 3-264 | STR 265-352 | RBD 353-648
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010845208.1
1 648
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,8335
Central domain 202 497 297 0,8345
C-terminal 498 648 150 0,8777
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-201
Central
202-497
C-terminal
498-648

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage BUCT696
[NCBI] 		2911664 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas veronii
[NCBI] 		654 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010845208.1 [NCBI]
Genbank nucleotide accession
NC_079186 [NCBI]
CDS location
range 44796 -> 46742
strand +
CDS
ATGCGCGGATATTCGTTTAGCGAATTGGTAAAGCTGTCAGAAGGGGCTCTCAAACGTAATGGGGATACGGCAACAGGGAATTTAACCGCACCGAAATTCCTGCTCAGCTCCCCGCAGGCAACAGAGCCGAACAGTGTAGTACGTAAAGACTTCTTTGACTCAACGGTGGCAGGTCTGAATGACGAAAATGATACCATGAAGTTGGGCATTTGGGAAGCCATGCGCCGCAGCTACGCGGAAGCTGGTTACAATCTCGTCGATGGCAGTTTCGAAGCTGGCGGAACGCTCGTAAGCGCTAACGATGTGCTGCTGCACGAGGCCAGCGGCAAAGCTTTCACTGGCCCTACGGGCACTGTTGCCGCTGAGACCAATCCGGCGAGCGGTGGGTTTGTTGATAGAAGTAACGAGCTTTTTAACGAAGATTTAGTTTCTTCACTCGCAACTAGAACAAACCTCGATACATCACTACTCGATGCTGACGGGGTTGTGGAGGCAATGTCTATCTCCGCAAACCGTGGTTTCCTACCTACCAAATATTCTTCACAGTGGAGAGAGCCACTGTCCGGGGCCGCGTATCCGCAAGCTCTTGCCGAGAGTGAGAACTACTATTTTATCACAGAAGATGATGGTACTGGCTCACCATACAATTCAAAAATATATCGGATAAACAAATCAACTGGCGTCAAATCAGCGGGGTCCCCCTACATCGCTAGTCACGGCCAAGGAATCGGCGTGATTAGTGATGACGTTGTTTTCATCGGTGGGTCAACTGACTCGAAGATTGCGACTTATAGCTTTGTAACCGGCTTGGTGACTGAGACAACATGCACTGGCCTATATAAGGATTTCCCATTCTGCTACGACAAGGACTCCGATAGGATATATCAACTGCAAGATGTCAACGCAACCAGTGATTTCATCGTCAGGCTTTCAATACTGGATAGAGTGAACGGGTTCATAGGTGATACAAGCATTCCTTTGATGATAGTTAAGGGAGGCTACCCGCAGGGATTGGCATATAGTGGCGGCCAACTGTATGTTACATGCGGTGGCCCCTGGACGTCATCGACGGGCGGTGCATGGAACGACTACTGGACTATGTATAAGATTTCGACCAGCGGCGTGGTGCTGGACTACATGGTGTTTAGACGTTCGTCCATGGGTGCGCCACTTGGGTTGCCATCTCTAACCCAACATGAGCCGCAGGGGATCTCCATACGCGATGGAAAGATAAGCCTTTTGCAACTTTTTGGCGGTGGATCTGGCGTCATAAAAAGCATTTATAAAGAAGATCAGGCGGGCCTCCTGGTGCGAAGCATACCGAGGAACAAATTCCATTTATATAATGGTCTAAATGATGTAGGTATCAATATTGCCACGCTTTCTGTAGGCTCTGCGATTAAAACCATTGTTGCTGGAATGAGTGACGGGACTTCGTTGACTTTCTCGTTTGCGAATGAAGCTTGGGTGTCCAATGATATCGGATTCCAATTCGGGGTCTGTACTGTGACACGTGTAAATGGATTTAGAGCTTACGCAATAGCCGTGGAGAGCAGCTCGGATATAACGGCAAACACCACACCAAGAGTGGCCATTATTTCTGTATTTGGAGCTACCCAGTCAAAACCAAAACTGATTGCGGGGGAAAGCAACACTCTGTCAGCCGGATACACTGGACCAGGGACACCAGCCGTGGCTGGGCCAATCACTATTACCAATGCGTCATTGGTAAATAACATGATGTTCCATGTTTCTGATACAGTATCCGGTTCGTCGTTTGTATCAAAATTCAGCAGGGCTGAAATTAATGGATACATCGCAAGCGGTGCTAGCATCACTTTGAAATCGAACCTGTCTGGGGCAATAGTGATGACATTCACAGTAAGCGGGGTTAACATTTCGTCTGTCTCTGGTACGCCGTACTTGCGGTACGTGTTTACAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2762f1004f11254175e797157d4f3927b65d9c01c616da310fea8b6276e94116
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5873
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50