Protein

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Genbank accession
AFH20854.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTVSIEVDHNDYIGNGVTTSFPYTFRIFKKSDLVVQVADLSENITELVLDTDYTVTGAGEYTGGNVILSTPLTSGYQISISRELPVTQEIDFRNQGKFFAEVHEDGFDKLTMLIQQAISWLRLSLRKPSFVANYYDALNNYIRNLRDPSRPQDAATKNYVDSVANTNLSHTLRTPEAIPSLPGIEQRKNKIVAMNDSGDPIMVLPESGSAADVLIELAKPTGAELIGTLSSKSVQQELMIKTSSFPTLQDAANYAVNGIIVDDDYHFTDGETVDFSGKKLTIECKAKFIGDGKLTFENLGSGSRIVHPHMQSQTVPYVISRWDSNGEWITEPSTIISTLTQSRTQGYAPTVNDVDIYNSLPDNVKNQNLISHLIISNSSGIDVFYPKATFGSYESFKNNNVKFWYPRDFYGDMSNCIAFTAWDSTDYYHGNYVIGGSTNYGSGSGVCFYRNDGGVGHDGGVIGGFTPYRCGESGVKTYQNEVNGISQRCYNLRFIDINPIETYYDGVDLNADYGTPTERQHDYTLAQYAWNNLPTNHIVSNIQAYKTHGVGIWGDGSTGFYRDIYASYSRGAGIFIKGSGKNFKNLTSIQNNAANTPGENQITLDGANIIDGVNIINYTQPTGLAIFAPNSTVTNLNAPSVPSSSINIGNIEGLVVGNLIHVQPNLANQTSAVYLNVVNTSVASKREDTIKIGPGASEVTRYVISGSSPRLTMRENHGDFGAVNIAFSGTVLPDEAVPDANSYAVYWDGTNLTALINHGGVLTRQKLTT
Physico‐chemical
properties
protein length:769 AA
molecular weight: 84040,33400 Da
isoelectric point:5,04272
aromaticity:0,09883
hydropathy:-0,29259

Domains

Domains [InterPro]
DC_0055
ATT
8–171
DC_0055 IPR012332
IPR011050
STR
240–766
IPR011050
IPR015331
RBD
240–767
IPR015331
AFH20854.1
1 769
Architecture
ATT
STR
ATT 8-171 | STR 233-769
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFH20854.1
1 769
Domain Start End Length (AA) Confidence
N-terminal 1 246 246 0,9959
Central domain 247 673 428 0,9882
C-terminal 674 769 95 0,8025
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-246
Central
247-673
C-terminal
674-769

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SPN9TCW
[NCBI] 		1162289 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH20854.1 [NCBI]
Genbank nucleotide accession
JQ691610.1 [NCBI]
CDS location
range 20163 -> 22472
strand +
CDS
ATGACGGTCTCAATTGAAGTTGACCATAACGACTACATCGGGAACGGGGTCACAACTTCATTCCCTTATACCTTCCGAATTTTTAAGAAGTCTGATCTGGTTGTGCAGGTTGCAGACCTGAGCGAGAACATCACAGAATTAGTCCTTGATACTGATTACACCGTTACTGGTGCGGGAGAGTACACAGGAGGGAATGTAATACTGTCAACGCCACTGACAAGTGGATACCAAATCTCAATTTCACGTGAGCTTCCAGTTACGCAGGAAATCGATTTCAGGAATCAGGGTAAATTTTTTGCAGAGGTTCATGAAGATGGTTTCGATAAGCTGACAATGTTGATACAGCAGGCTATTAGCTGGTTGCGCCTTTCTCTACGTAAGCCGTCGTTTGTGGCTAATTATTATGATGCGCTGAACAACTACATCCGAAACCTTCGCGACCCGTCACGACCTCAGGATGCCGCCACCAAAAATTATGTAGATAGCGTAGCTAATACCAATCTAAGCCACACACTGAGAACTCCTGAAGCAATCCCTTCATTGCCCGGGATAGAACAACGTAAAAATAAAATTGTCGCGATGAATGATAGTGGCGATCCGATAATGGTTCTTCCTGAGTCTGGTTCCGCTGCTGATGTGCTGATAGAACTGGCAAAGCCAACAGGTGCTGAATTAATAGGAACTCTTTCTAGTAAATCAGTTCAGCAAGAGTTGATGATAAAGACATCCTCATTCCCAACTTTACAGGATGCTGCTAACTATGCTGTAAACGGGATAATTGTTGATGATGATTATCATTTTACTGACGGAGAAACTGTTGATTTTAGTGGTAAAAAGTTAACAATTGAATGTAAGGCAAAATTTATTGGAGATGGTAAATTAACATTTGAAAATTTAGGCTCAGGATCACGCATTGTTCATCCACACATGCAGTCACAAACGGTGCCTTACGTTATATCAAGATGGGATAGCAATGGGGAGTGGATAACTGAACCCTCTACTATCATTTCTACTCTTACTCAAAGCAGAACGCAAGGCTACGCACCTACAGTTAATGATGTAGATATATATAACTCTCTACCAGATAATGTTAAAAACCAAAATTTAATATCACATCTCATTATATCTAATTCATCAGGCATAGATGTGTTTTATCCAAAAGCAACGTTTGGATCATATGAATCATTTAAAAATAATAATGTGAAGTTTTGGTATCCACGTGATTTTTATGGAGACATGTCAAACTGTATCGCATTTACTGCATGGGATAGCACCGATTACTACCATGGTAATTATGTAATCGGAGGTTCAACTAATTATGGATCAGGAAGTGGGGTGTGTTTTTATCGAAATGATGGAGGGGTTGGCCATGATGGAGGAGTCATTGGTGGATTTACCCCTTACAGATGCGGTGAATCAGGTGTTAAAACATACCAGAACGAAGTTAACGGGATAAGTCAAAGATGTTATAATCTTCGTTTCATCGATATCAATCCGATAGAAACGTACTATGATGGTGTAGATCTGAATGCTGACTATGGCACGCCAACTGAACGCCAGCATGATTACACATTGGCGCAATACGCTTGGAACAACCTTCCAACAAACCACATCGTTAGCAACATTCAAGCGTATAAGACTCATGGAGTTGGTATTTGGGGTGACGGATCTACAGGGTTTTATCGAGATATCTATGCATCATATTCTCGTGGCGCAGGTATATTTATCAAAGGAAGTGGGAAGAATTTTAAAAACCTAACTTCCATTCAAAACAATGCAGCTAACACGCCAGGAGAAAACCAGATTACACTTGACGGAGCAAACATAATTGATGGTGTAAATATAATAAATTACACACAACCAACAGGACTTGCGATTTTTGCTCCAAATTCTACAGTCACTAATCTTAATGCTCCAAGTGTTCCTTCATCATCCATAAACATTGGCAATATTGAGGGGCTGGTGGTTGGCAACCTAATACATGTGCAGCCAAATCTTGCAAATCAAACTTCAGCTGTGTATTTAAATGTAGTCAATACTAGTGTGGCATCTAAAAGAGAGGATACCATAAAGATTGGCCCAGGAGCGTCAGAGGTTACCAGATATGTAATTTCAGGTAGTTCACCTAGGTTAACCATGAGAGAAAACCATGGCGATTTTGGGGCGGTAAATATTGCATTCTCTGGGACCGTCCTGCCAGACGAGGCCGTACCGGATGCAAATTCCTATGCTGTATATTGGGATGGGACAAACCTCACTGCTTTGATAAATCACGGTGGTGTTCTTACAAGACAGAAGTTAACAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5adcd8ca93a78f7c9f6a4a285f99fa22a247f405f677b2eb8287b69dd551077b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6822
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella typhimurium Bacteriophage SPN9TCW Shin,H., Lee,J.-H. and Ryu,S. 2012-03-15 — GenBank