Protein

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Genbank accession
BDA82298.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTLNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITEDLVYSFNKSQKVKLTDDRGLAKTYGSIKALREIKEPGYYYINARTLAMLTDKPDMESIDVVLQVLPLDSSTNVVQHLYTLSTNNNQIRTMYRYVSGNSSSEWQFIQGLPSNKNAVITGSNVEDLTSPGVYFVRGMTGGMPSGVDSGFLGLSIDSNDNRLARLTDAETGKEYINTKKSSGVYIGWNKEFEPEDIQRYIPTKVNPPEGVASYNISIYKSDNTSFNKAIENHISETKETFISFYCQGGVSGNPTGLSSSRGIVMVDTSDVDNFYGIYNAVGTDGRNATGSVVGGNWSSPKNTPSYKELWTGAQSFSSIGTTKNLADDISNYSYVEVYTKHKTAEKTKGNDDSGTICHKFYLDGSSTYVCSGTFVSGERTDKTVPITEFYRVGINFSGTTWKIVDSAVQSNKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:460 AA
molecular weight: 50843,89560 Da
isoelectric point:5,37114
aromaticity:0,10000
hydropathy:-0,46717

Domains

Domains [InterPro]
DC_1773
STR
7–243
DC_1773 IPR057110
DC_0448
STR
195–459
DC_0448
BDA82298.1
1 460
Architecture
STR
STR 7-460
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDA82298.1
1 460
Domain Start End Length (AA) Confidence
N-terminal 1 322 322 0,5556
Central domain 323 449 128 0,0155
C-terminal 450 460 10 0,9951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-322
Central
323-449
C-terminal
450-460

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SsapH-Golestan-105-M
[NCBI] 		2872011 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDA82298.1 [NCBI]
Genbank nucleotide accession
LC648442.1 [NCBI]
CDS location
range 33975 -> 35357
strand -
CDS
ATGACATTAAACTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTACTCAGGTCAATAATATTGGAGAAGAACTAACAAAAGAAAGAAATATATTTGACATTACAGAAGATTTAGTATATAGTTTTAATAAATCACAGAAAGTTAAATTAACAGATGATAGAGGGCTAGCTAAGACTTATGGAAGTATAAAAGCACTTAGAGAGATAAAAGAACCAGGGTATTACTATATAAATGCAAGAACATTAGCAATGCTAACAGATAAACCTGATATGGAATCTATTGATGTAGTACTACAAGTACTACCTTTAGATTCTTCCACTAATGTAGTGCAACACTTATATACACTATCCACTAATAATAATCAAATTCGAACGATGTATAGATATGTTTCCGGTAACTCAAGTTCAGAGTGGCAATTTATTCAAGGATTACCTAGTAATAAAAATGCTGTTATAACAGGCTCTAACGTAGAAGATTTAACTTCACCAGGTGTTTACTTTGTTAGAGGAATGACAGGAGGAATGCCTAGTGGTGTTGATTCAGGGTTTTTAGGATTAAGTATAGACTCTAATGATAATAGATTAGCTAGGCTAACTGATGCTGAAACTGGTAAAGAATACATTAATACCAAAAAATCATCAGGGGTTTATATAGGATGGAATAAAGAATTTGAACCTGAAGATATACAGCGTTATATACCAACAAAAGTTAATCCTCCTGAAGGTGTAGCATCCTATAATATATCTATTTATAAATCAGACAATACATCATTTAATAAGGCTATAGAAAATCATATCTCAGAAACAAAAGAAACATTTATTTCCTTTTACTGTCAAGGAGGGGTGTCAGGTAATCCTACAGGGCTCTCAAGTAGTAGAGGTATTGTTATGGTAGATACTTCTGATGTTGATAATTTTTATGGTATATATAACGCAGTAGGGACTGATGGTAGGAATGCTACTGGTTCAGTAGTTGGAGGTAATTGGTCTTCACCAAAAAATACACCATCATATAAAGAATTATGGACGGGAGCACAATCATTTTCATCTATAGGTACTACTAAGAATCTAGCAGATGACATTAGTAATTATTCGTATGTAGAGGTCTACACTAAGCATAAGACAGCAGAGAAGACCAAAGGTAATGATGATTCAGGAACAATCTGTCATAAATTCTACCTAGATGGTAGTAGTACTTACGTTTGCTCAGGGACTTTTGTTTCAGGAGAGAGAACAGACAAAACAGTTCCTATTACAGAATTTTATAGAGTAGGTATTAATTTTTCCGGAACAACTTGGAAAATAGTAGATAGTGCAGTACAAAGTAATAAAACTCAATATGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
767c8ed0f357fea50ae6e16c0b31c12f60f31446be22a54197115fe926a0905c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7888
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of phage genome Yazdi,M., Ghaemi,E.A., Shirzad-Aski,H., Mohebbi,A., Tabarraei,A., Sabzali,S. and Rafiee,M. 2013-08-01 — GenBank