Protein

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Genbank accession
UXD81447.1 [GenBank]
Protein name
pectate lyase superfamily protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTEHFITLSTTEPNNNIGIVKLRHADVNSQAIVAQIVENGQPKNFEGLQPFFCLMAQETTGQGVSEESIVSFDASKGTLSYIASDNALQMVGRNEAYFSFRKEEGGRWIEQFSTRTFHYIVEKSIYSQPFKDSNYWWTFKELYRIFNQYIDDGKISWEEFVNQNKKIIESVDPGGVLLTRLGIFSSFRDWDFSILEKVKNEFEERGVNVKWFGAKGDGVTDDTVAIQSAIDYAYARRPMTVILPMAKYAIQPVVVKDGVRLVSSTANIPYGWNELVESGFIAKSATDKFLVTVENGATLENIIVDSNSISLGVDCARSGKLENVTCFRSKSTGIILRGGIANNIRSGHNLGQGVIIAESDTLLSNFLIFGNRGDGLELQKWVNNNSIVNGKIEFNDKFNISLYSNSNNYFTNVNIDRSGRYGINAVGAIATFVNCQLLRSFKTESGGAHIYMENATTINLIGGNINKGADDGGGGLESPTYIAKAYDSKKMTLNIVGVDATNACTGDPIYGAIKLGLSSTLLTDSIESKSDAHTFTPIAPSDLLQKKEGQVFYNKNTKRLEMYNGESLVGTNGSAAGQNYYDRKSVSVSKSSSQSVTLSLGFEIPQYTRQGATLELHMRRAETGAGGVTKIPIMLGRESTTTTVTVGTPQNLIGSLFNPSDLVISNVSIDSNNVLTVEILNNSASLSANGQIMLSQ
Physico‐chemical
properties
protein length:696 AA
molecular weight: 76143,66080 Da
isoelectric point:5,55001
aromaticity:0,09052
hydropathy:-0,21394

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
1–126
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 DC_0685 DC_0770
G3DSA:2.60.40.3350
ATT
1–135
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 IPR011050
IPR018913
ATT
3–148
IPR018913 IPR012334
IPR024535
ENZ
207–423
IPR024535
UXD81447.1
1 696
Architecture
ATT
STR
ATT 1-186 | STR 197-512 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UXD81447.1
1 696
Domain Start End Length (AA) Confidence
N-terminal 1 222 222 0,9944
Central domain 223 525 304 0,9927
C-terminal 526 696 170 0,9694
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-222
Central
223-525
C-terminal
526-696

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage D4351
[NCBI] 		2979361 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXD81447.1 [NCBI]
Genbank nucleotide accession
OP323075 [NCBI]
CDS location
range 15749 -> 17839
strand +
CDS
ATGACAGAACATTTTATAACACTATCCACCACAGAGCCTAATAATAATATTGGCATTGTTAAGCTAAGACATGCGGATGTCAATAGTCAAGCCATTGTTGCTCAAATTGTAGAGAACGGTCAGCCTAAAAATTTTGAGGGACTGCAACCGTTCTTTTGTTTAATGGCACAAGAAACCACAGGTCAAGGCGTTTCGGAAGAAAGCATTGTTTCATTCGATGCATCCAAAGGAACACTAAGCTATATTGCCAGTGACAATGCTTTGCAAATGGTTGGACGAAATGAAGCTTATTTTAGCTTTAGAAAAGAAGAAGGTGGGCGGTGGATTGAGCAATTCTCCACTCGGACTTTTCACTATATTGTTGAGAAATCCATTTATTCGCAACCCTTCAAAGACTCAAACTATTGGTGGACTTTCAAAGAGCTTTATCGAATCTTTAATCAGTATATTGATGATGGTAAAATAAGTTGGGAAGAGTTCGTTAATCAAAACAAAAAAATAATAGAATCAGTTGATCCGGGAGGAGTTCTTTTAACTAGATTGGGAATTTTTTCATCTTTTCGAGATTGGGATTTCAGCATACTAGAAAAGGTAAAAAATGAGTTTGAAGAACGAGGAGTCAACGTCAAATGGTTTGGAGCTAAAGGAGACGGAGTAACTGATGATACTGTTGCGATACAAAGCGCAATAGATTATGCGTATGCTAGACGACCAATGACAGTTATACTACCAATGGCTAAATACGCTATACAGCCAGTTGTTGTAAAAGATGGCGTTAGACTCGTATCAAGTACGGCTAATATACCGTATGGGTGGAATGAACTTGTGGAATCAGGTTTTATAGCTAAATCAGCAACAGATAAATTTTTAGTGACTGTCGAAAATGGTGCAACACTTGAAAATATAATAGTTGACTCAAACTCAATTTCACTCGGTGTTGACTGTGCACGCAGTGGGAAATTAGAGAACGTCACATGTTTTAGATCAAAATCAACAGGTATTATTTTACGTGGAGGCATTGCGAATAATATAAGGTCAGGTCATAATCTAGGACAAGGTGTTATCATAGCAGAATCAGATACATTACTATCAAATTTCCTTATTTTTGGTAATCGAGGAGATGGACTAGAGTTACAAAAATGGGTAAATAACAATTCGATTGTAAATGGAAAAATTGAATTTAATGATAAATTCAATATCTCACTCTATTCAAATAGTAATAATTATTTTACTAACGTTAATATTGACAGGTCTGGGAGATACGGGATAAATGCAGTAGGAGCAATTGCAACATTTGTAAACTGTCAATTATTGCGTTCTTTTAAAACAGAGTCAGGCGGAGCACATATATACATGGAAAACGCTACAACTATTAATCTTATTGGAGGTAATATAAATAAAGGGGCCGATGATGGTGGTGGTGGATTAGAATCGCCTACATACATTGCTAAGGCATATGATAGCAAAAAAATGACATTGAATATTGTCGGTGTAGATGCAACTAATGCATGTACAGGGGATCCTATTTATGGTGCTATCAAATTAGGGTTGTCATCTACTTTATTGACTGACTCAATCGAGTCAAAGAGCGACGCACATACATTTACGCCTATCGCACCTAGTGATTTATTGCAAAAAAAAGAGGGTCAAGTTTTTTACAATAAAAATACAAAAAGATTAGAAATGTACAATGGCGAGAGTCTTGTTGGCACAAATGGTTCAGCTGCAGGGCAAAACTATTATGATAGGAAAAGTGTTAGTGTAAGTAAATCGTCCAGTCAAAGCGTTACTTTATCATTAGGTTTCGAGATACCACAATACACTAGGCAGGGTGCGACTTTAGAATTACATATGCGGCGGGCTGAAACTGGCGCGGGCGGTGTAACAAAAATACCAATCATGCTAGGACGCGAATCGACCACTACTACAGTCACAGTTGGCACGCCACAAAATTTAATTGGAAGCCTATTTAACCCATCAGATCTCGTGATAAGTAATGTATCTATAGACTCAAACAACGTATTAACAGTCGAAATTTTAAACAATAGTGCGAGCTTAAGTGCAAATGGTCAAATTATGTTGAGTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
da29b0ed2f2caf763f5002c2dff87ae0393bcbab1a9dcdec2e13289085592aa1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8033
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host-encoded, cell surface-associated exopolysaccharide required for adsorption and infection by lactococcal P335 phage subtypes Millen,A.M., Romero,D.A., Horvath,P., Magill,D. and Simdon,L.B. 2022 — GenBank