Protein

View in Explore
Genbank accession
YP_004324166.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,68
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MAEFRLGRVKFNWTGDWTTSKAYLIDDIAKFGGNTYVAIENHTSTASVSDFYANDLSKWNIHIEGLEQKGQWATGVYYRINDLVKFGNVVYRVTTAHTSEGTFIDKTKVTEYVKGFQNEGEWDGNVEYQSGDVVNYNGSSYVALTTSLAGFQPPQYLGVSTDPNAKWTILSDGLAGAASTYIEGTYYRGDLIQYGGNIYRHKLGITTNVSPLQVGLGSIQPQSFTGTEVWDLLVKGFDFKGGFSTTFNYHPGHVARYGSDSYISIGSSHKNVIPTAGIGTFWEVLASGDSSAALNTKGDLLSYNSGNVRIGIGSTGYALAVQSNGMPGYEIVGNQTRIYYVDSEDGLDVNNGLAPNLAFKTIKKACEAARPKTNITNMVYTASTGVATVTAPGHGLLNTGTFVQLQDIQFECLSGGNVFNVLGMTYNKAVGLATITAIGLGAAPEVGIGATVRIRNLSVQYQGSAQFAHTFQTATEDAIQSGGDYVHTFNSCAPNGVTVVGGSSITPTSATYDPSNGNFTMTITGHSLSTSDSVTIADNAFTFTCTMNNNASQKTYPRPGKDPAQGQQLAITGTTTDTITVNVGPSPIVNHQPTAVSYNQATGDMVCTIGPHTLTVGTSVKLATDGMVFRCSMDGYTTDHSYPRQVAGDGNPDPAYNTALNITAVTTNTITINVGTASDDQTITGKFPAVHTQGTYEFLVQAVPDSNSITLNVGVSTTDYLYVSGGTAFVGLTTTKYPDKVAKSYYEVLEVTDVDNFKCNVGISTIDHTYVEGGLVTDLTPAILKLSASQFYEQLPVTVPPFTSIVGNALRGSQVLPKAGTSDDSSTPNNRSHMFKMSDATTIQAISMKGMEGFYYDPNAPLELDNSNLRTGIGTTAAGVFISLNPDSPIDNKSPYVKDCTCFSDPATESGRFGGGGVGVFIDGGVHDTGAKSMVFDAFTHVASDGAGYILDKGAIAEIVSCFTYYAKWGYYSGGGSRIRGVGGNNSYGDYGVISSGFSTDEVPRTAKVFGDMMTVQGTTKGGTVSIGATMFGQTSKATAWMLNDQISADKIYFKYQSGYGNAGIGTTGFVDGEIVWFGNGAENSSGVGSITVGAAASSTTGQKGTILEVDQTSGTLLIGDAIGFQTTAYGADDRFYIINTITNVAAAATYYEWQAGNGASQQVVFNNRATLTISPEKSRGTWDTRNSGSTSDIEIRTLFSQARLTGHDFLAVGTGNKTQTGYPNVNLANVIQGQETNVFGPGKVFFVSTDQGGNFRVGDFFSVDQLTGRATLDASAFNLSGLTELRLGAIGGQVGEAINEFSSDETLAGNSNTACPTEFAVKGFLTRGSMGIKAMTPPVGTTAQRPGGVDDEFNTGALRFNTTLGALEYYNGTTWIQPGVKTYSTVSSSFSATSGVTYFVNTGGGQVTATLPASPDLGAEITFMDVAKTFDSNNLVVSRNGRPIQGDNANLTVSTEGAAFTLVYSGSTYGWRIFSI
Physico‐chemical
properties
protein length:1477 AA
molecular weight: 156014,87700 Da
isoelectric point:4,94871
aromaticity:0,10156
hydropathy:-0,15342

Domains

Domains [InterPro]
DC_2181
ATT
4–67
DC_2181 G3DSA:2.10.10.90 DC_0066 DC_0419 DC_0763
G3DSA:2.10.10.20
ATT
15–64
G3DSA:2.10.10.20
YP_004324166.1
1 1477
Architecture
ATT
STR
STR
STR
STR
ATT 4-67 | STR 70-159 | STR 230-385 | STR 449-595 | STR 623-1441 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324166.1
1 1477
Domain Start End Length (AA) Confidence
N-terminal 1 362 362 0,9082
Central domain 363 561 200 0,6218
C-terminal 562 1477 915 0,1558
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-362
Central
363-561
C-terminal
562-1477

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324166.1 [NCBI]
Genbank nucleotide accession
NC_015287.1 [NCBI]
CDS location
range 93784 -> 98217
strand +
CDS
ATGGCTGAGTTTAGACTTGGAAGAGTAAAATTCAACTGGACAGGTGACTGGACAACATCCAAAGCCTATTTGATTGACGATATCGCCAAGTTTGGTGGTAACACTTATGTGGCAATCGAGAACCACACGTCAACAGCAAGTGTCAGTGACTTTTACGCTAACGACCTTTCCAAATGGAACATCCATATTGAAGGTCTAGAACAAAAAGGACAATGGGCTACTGGAGTCTACTATCGTATTAACGACTTAGTAAAATTCGGTAACGTTGTTTATAGAGTTACAACTGCTCACACATCAGAAGGAACTTTCATCGATAAGACGAAAGTTACTGAGTATGTAAAAGGATTTCAAAACGAAGGTGAGTGGGATGGCAATGTAGAGTATCAATCAGGTGACGTTGTAAATTACAACGGTTCATCTTATGTTGCGTTAACCACATCTCTTGCTGGATTCCAACCTCCTCAGTATTTGGGTGTTTCCACAGATCCAAATGCTAAGTGGACTATCTTATCTGATGGTCTTGCTGGTGCGGCTTCAACATACATTGAAGGTACTTACTACAGAGGTGACCTTATTCAGTATGGTGGTAACATCTATCGTCATAAATTAGGTATCACAACCAACGTTTCTCCTTTACAGGTTGGTTTAGGATCTATTCAACCACAATCTTTCACTGGTACAGAAGTTTGGGATCTTCTGGTTAAGGGATTTGATTTCAAAGGCGGTTTCTCCACGACCTTTAACTATCATCCAGGCCACGTTGCAAGATACGGTTCAGACTCTTACATCTCTATTGGTTCTTCTCACAAGAATGTTATTCCTACCGCTGGTATCGGAACTTTCTGGGAAGTTCTTGCATCTGGAGATTCCTCTGCTGCTCTTAACACCAAGGGTGACTTACTCAGTTACAACTCTGGTAATGTAAGAATCGGTATTGGTTCTACAGGTTATGCACTTGCAGTCCAGTCAAATGGAATGCCAGGCTACGAGATTGTAGGTAACCAAACAAGAATTTACTACGTTGACTCCGAAGACGGATTAGACGTAAACAACGGTCTTGCACCTAACTTGGCGTTTAAGACTATTAAAAAGGCTTGCGAAGCTGCTCGTCCTAAAACAAACATCACCAATATGGTGTATACCGCTTCCACTGGTGTGGCAACGGTTACTGCGCCTGGTCACGGTCTGTTAAACACTGGTACGTTCGTTCAGTTACAAGATATTCAGTTTGAGTGTCTATCTGGAGGTAACGTATTCAACGTTCTGGGTATGACCTATAACAAGGCAGTTGGTCTTGCAACGATTACTGCTATTGGTCTTGGTGCTGCTCCCGAAGTTGGAATTGGTGCAACTGTTAGAATCAGAAACTTGAGTGTTCAGTATCAAGGTTCTGCACAGTTTGCTCATACATTCCAAACCGCAACAGAAGACGCTATCCAGTCTGGTGGTGACTATGTTCACACATTCAACAGTTGTGCTCCAAACGGAGTGACAGTTGTTGGTGGATCCAGTATCACTCCAACAAGTGCTACATATGATCCTTCAAATGGTAACTTCACTATGACTATCACAGGTCATAGTTTATCAACTTCTGACAGTGTTACCATCGCTGATAACGCATTTACGTTCACCTGTACGATGAACAACAATGCAAGTCAGAAGACATATCCTAGACCTGGCAAAGACCCTGCACAAGGACAACAGTTAGCAATTACAGGTACAACAACTGATACAATTACAGTTAACGTTGGACCTTCTCCAATCGTCAACCATCAACCAACTGCGGTTTCTTATAACCAAGCAACTGGTGACATGGTTTGTACAATCGGACCACACACATTAACAGTTGGTACATCTGTTAAGTTGGCTACTGATGGTATGGTATTCCGTTGTTCAATGGACGGATACACAACCGATCACTCTTATCCTCGTCAAGTTGCTGGAGATGGTAACCCTGACCCTGCATACAACACAGCTCTTAACATTACTGCTGTTACAACCAACACAATTACAATCAACGTTGGTACTGCGTCTGATGATCAGACAATCACTGGTAAGTTCCCTGCTGTACATACTCAAGGTACTTACGAATTCCTTGTACAGGCTGTACCCGACTCCAACTCTATTACTTTAAACGTTGGTGTTTCTACTACCGATTACCTCTATGTTTCTGGTGGTACTGCGTTCGTTGGTTTAACAACAACCAAGTATCCCGACAAGGTTGCTAAGTCTTACTACGAGGTTCTTGAAGTTACTGATGTTGACAACTTTAAGTGTAACGTTGGTATCTCCACAATCGATCACACATACGTTGAAGGTGGTTTAGTTACAGACTTGACCCCTGCTATCTTGAAACTGTCTGCGTCTCAGTTCTACGAACAGTTACCAGTTACAGTTCCTCCTTTCACTTCGATTGTTGGTAACGCACTTAGAGGTTCACAGGTTCTTCCTAAGGCTGGAACATCTGATGACTCTTCAACTCCTAACAACAGGAGTCACATGTTCAAGATGTCTGATGCAACAACTATTCAGGCAATCTCCATGAAAGGAATGGAAGGATTCTACTATGATCCTAACGCTCCTTTAGAGTTAGATAACTCTAACTTAAGAACTGGTATCGGTACAACCGCTGCTGGTGTGTTCATCTCCTTGAACCCAGATTCACCTATCGATAACAAGTCACCTTATGTTAAGGACTGTACTTGTTTCTCCGACCCTGCAACTGAGAGTGGCAGATTCGGTGGTGGTGGTGTTGGTGTATTCATCGATGGTGGTGTACACGACACAGGTGCAAAATCAATGGTGTTCGATGCGTTTACGCACGTTGCATCTGATGGTGCTGGTTACATTCTTGATAAGGGTGCAATCGCTGAAATCGTTTCCTGTTTCACATACTACGCTAAGTGGGGTTACTACTCAGGTGGTGGATCAAGAATCAGGGGTGTTGGCGGAAACAACTCTTACGGAGACTACGGTGTTATCTCATCTGGTTTCTCAACTGATGAAGTTCCCAGAACTGCAAAGGTCTTTGGTGACATGATGACAGTTCAAGGAACAACCAAAGGCGGTACAGTTTCTATCGGTGCTACCATGTTCGGTCAGACATCTAAGGCAACTGCATGGATGTTGAATGATCAGATCTCCGCTGATAAGATTTACTTCAAGTATCAAAGTGGATACGGTAATGCTGGTATCGGTACTACTGGATTCGTAGATGGAGAAATCGTCTGGTTCGGTAATGGTGCTGAGAATAGTTCTGGTGTGGGTTCAATCACAGTCGGAGCTGCCGCATCTTCCACAACTGGACAGAAAGGAACAATTCTAGAGGTTGACCAAACATCTGGAACACTTCTAATCGGTGATGCTATCGGATTCCAGACAACCGCTTACGGTGCAGACGATAGATTCTACATCATCAACACAATCACGAATGTTGCCGCCGCGGCCACATACTATGAGTGGCAGGCTGGAAACGGTGCAAGTCAACAAGTTGTCTTCAACAACCGTGCAACTCTGACAATCTCTCCTGAGAAATCAAGAGGAACATGGGATACTAGAAACTCTGGTTCCACATCTGACATTGAAATCAGAACACTGTTCTCACAGGCAAGACTAACAGGACACGACTTCCTCGCAGTTGGTACTGGTAACAAGACACAGACTGGATATCCAAACGTCAACTTGGCGAACGTTATCCAAGGTCAGGAAACTAACGTGTTCGGACCTGGTAAGGTGTTCTTCGTATCTACTGACCAAGGTGGTAACTTCCGAGTTGGAGACTTCTTCTCCGTTGACCAGTTGACTGGTCGTGCAACATTGGATGCTTCCGCGTTCAACTTGTCTGGTTTGACAGAATTGAGACTGGGTGCTATCGGTGGTCAGGTCGGTGAGGCAATCAACGAGTTCTCCTCTGATGAGACACTTGCTGGTAACTCAAACACTGCATGTCCTACAGAATTTGCAGTTAAGGGATTCTTAACTCGCGGTTCAATGGGTATCAAGGCAATGACACCTCCTGTTGGTACAACTGCTCAAAGACCTGGCGGCGTTGACGATGAGTTCAACACTGGTGCGTTAAGATTCAACACTACCTTGGGTGCTCTTGAGTACTACAACGGTACAACATGGATTCAGCCTGGTGTTAAGACATATAGTACTGTTTCTTCAAGTTTCAGTGCTACTTCTGGAGTCACATACTTTGTGAACACAGGTGGTGGTCAGGTAACTGCTACACTCCCTGCATCTCCTGACTTAGGTGCTGAGATTACATTCATGGACGTTGCTAAGACCTTCGACTCAAACAACTTGGTTGTTTCCAGAAACGGTAGACCAATCCAAGGTGACAATGCTAACCTAACTGTTTCCACAGAAGGTGCTGCATTTACCCTCGTTTACTCTGGTTCCACATACGGTTGGAGAATCTTCTCCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f713b6f72cdcdfcb52a5830c3f1d835829ff1249e590830a00dd8c998f860a5a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5341
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank