Protein

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Genbank accession
QJT71376.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MVAPIIYLKQADLATGEYTYISDQGIVARGSDKDNDELIYEYDRSGGFLQHLADNGYVVTSDKVTGPNLPAEGVNIVTFSENSGGSVVVPPTVVAQYDTIVGVGASIQNGVYELANGMFDEPYYGTKFTSASTPGTTLQFMIDNVTNFTSLVDGRTLFIVSAGGNDCNAVMSPGGVGDDDAGTGSILSWDELAQIHKDEAEARYRELIGLLQATGADVALSTFTYRDAKGLLTQMPDKGRNTHAGQWIDNLIVPLCRELTPDWFDFNTNRPKFDSYSFVINDPSMLDDDNLHFYDDAVFDNEGVAGYPIPQGSHRLRQYMLGQVAKYTEFSMAPYDEDLYNDRILFNIGSNVDGTRGRKSYMPWANNLYCSNANEVYSTIKSYNSDDVGITFTVDFSSNGFGRNNLNGALEEWIEGCGDRNIVSSGRAANNSHTHIYRLTGMRGKKGKMSLIGVYSFGTADPAALNEFRITDDNGENAVTSEQVVPSNTSVKPYIVEYDFDCTNSDELTIQTGPAGTATYGILSGFHMDILK
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58127,50200 Da
isoelectric point:4,40311
aromaticity:0,10526
hydropathy:-0,32801

Domains

Domains [InterPro]
IPR036514
STR
91–298
IPR036514 DC_1476
SSF52266
STR
102–294
SSF52266
QJT71376.1
1 532
Architecture
STR
RBD
STR 91-298 | RBD 299-532
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJT71376.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9916
Central domain 97 350 255 0,6467
C-terminal 351 532 181 0,9029
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-350
C-terminal
351-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VcorM_GR28A
[NCBI] 		2711163 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJT71376.1 [NCBI]
Genbank nucleotide accession
MT366762 [NCBI]
CDS location
range 54947 -> 56545
strand -
CDS
ATGGTTGCACCAATCATCTACCTTAAGCAAGCTGACCTTGCGACAGGTGAATACACCTACATCTCTGACCAAGGGATTGTAGCTCGCGGCTCTGACAAAGACAATGATGAGCTAATCTATGAATATGACCGCTCAGGCGGCTTCCTTCAGCACCTTGCGGATAACGGTTACGTTGTGACCTCTGATAAAGTGACTGGCCCCAACCTACCAGCCGAAGGTGTGAACATCGTTACCTTTAGTGAAAACTCAGGCGGTTCAGTGGTAGTACCACCTACCGTTGTGGCACAGTATGACACCATTGTCGGCGTTGGTGCTTCAATCCAAAACGGCGTGTATGAACTGGCCAATGGTATGTTTGACGAACCATACTACGGTACTAAGTTCACATCCGCATCAACTCCAGGGACTACTCTACAGTTCATGATCGACAACGTGACTAACTTCACTAGCCTTGTTGATGGTCGCACCCTGTTCATTGTATCTGCTGGCGGTAACGACTGTAATGCTGTTATGAGTCCGGGAGGTGTCGGTGATGACGACGCTGGCACAGGCTCAATTCTAAGCTGGGATGAGCTGGCTCAAATTCACAAAGACGAAGCAGAAGCACGCTACCGCGAACTTATCGGCCTATTACAAGCAACTGGTGCCGACGTTGCTTTGTCTACATTTACGTATCGTGATGCTAAAGGTCTATTGACACAGATGCCTGATAAAGGTCGTAACACTCACGCGGGCCAATGGATTGATAACCTCATCGTACCTCTGTGTCGTGAGCTAACGCCAGACTGGTTTGACTTCAACACTAACCGTCCGAAGTTTGACAGCTACTCATTCGTTATCAATGATCCTTCAATGCTGGATGACGATAACCTACACTTCTATGACGATGCAGTGTTTGACAACGAAGGCGTGGCAGGCTACCCAATCCCTCAAGGCTCTCACCGCCTACGTCAATACATGCTTGGTCAAGTAGCGAAGTACACCGAATTCAGCATGGCACCGTACGATGAAGACTTGTACAATGATCGCATCCTGTTCAACATTGGTTCTAACGTTGACGGTACACGCGGTCGTAAGAGCTACATGCCGTGGGCTAACAACTTGTACTGTTCAAATGCAAACGAGGTGTACAGCACCATCAAGTCTTACAATAGTGATGATGTTGGTATCACGTTTACTGTGGACTTCAGCTCAAACGGTTTCGGCCGAAACAACCTGAACGGTGCTTTAGAAGAATGGATCGAAGGATGTGGTGACCGCAACATCGTCTCCAGTGGACGTGCGGCTAACAATAGTCACACCCACATCTACCGTCTGACAGGTATGCGCGGTAAGAAGGGTAAGATGAGCTTGATTGGTGTGTACAGCTTCGGCACGGCTGATCCGGCGGCATTGAATGAGTTCCGCATCACTGACGACAACGGTGAAAACGCTGTGACTTCTGAGCAGGTTGTACCGTCTAACACGTCTGTTAAACCGTACATTGTTGAGTATGACTTCGATTGTACTAACAGCGATGAGCTGACAATTCAGACTGGTCCTGCTGGTACTGCCACATACGGTATCCTGAGTGGCTTCCACATGGATATCCTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c716432b76180b90b946436c51260317cb385f283707d3040af9520c0082d719
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6534
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequencing of Vibrio coralliilyticus phages from Hawaiian seawater Richards,G.P. 2017-10-12 — GenBank