Protein

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Genbank accession
XLM30213.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDSYLNGRKVDVLNPLDLIGVGRHKLEIQIDKKNYWNMFKEQVIIPTPPNNGVNNLFRGGEILPSEVYSDNWYKTWAFYAFGGQSTIERKNDLYPQMTYFKFANNTGIADIVSNQFEREVELKPNTRYTWQFNARKIKGDMLTYFGANGSVLVDNTKNVTVDGQTGLRLGADLFYNWSDKAVTDGWELHYISFTTASTLPTSKTFRFRMNAGSEWHVKNIQITEGEGPKPFQLSEADRYKYTQYQMDKGHREIYPNFGFYYSEEFDFCCAYKVNIHSGFETVDFNPVEQSYTIRCEVENFAQILNPVKEYYIKVPSSCTFDNSILMNPTTERGGNYLLECKAKGLHLQVFEQPDGDYSRSQNRKVYSNMYDNLSNKLWNVYGGFVYTGELQTYKVEN
Physico‐chemical
properties
protein length:397 AA
molecular weight: 46092,06190 Da
isoelectric point:5,80465
aromaticity:0,15113
hydropathy:-0,62040

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM30213.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,9592
Central domain 27 225 200 0,0999
C-terminal 226 397 171 0,7588
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-225
C-terminal
226-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage vL_308A
[NCBI] 		3385187 Viruses >
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM30213.1 [NCBI]
Genbank nucleotide accession
PQ594020 [NCBI]
CDS location
range 4707 -> 5900
strand +
CDS
ATGGATAGTTATTTGAACGGAAGAAAAGTAGATGTATTAAACCCTTTAGACTTAATCGGAGTAGGGCGCCATAAGTTAGAAATACAAATAGACAAGAAAAACTATTGGAACATGTTCAAAGAGCAGGTAATCATACCAACACCACCAAACAACGGTGTAAATAACTTGTTTAGGGGTGGAGAAATTTTGCCTAGTGAGGTGTATAGTGATAACTGGTATAAAACTTGGGCTTTTTATGCTTTTGGTGGTCAAAGTACCATAGAACGTAAAAATGATTTATACCCTCAAATGACTTATTTCAAGTTTGCAAACAATACAGGTATTGCTGACATTGTTTCAAATCAGTTTGAAAGAGAAGTGGAACTAAAACCAAACACTAGATACACTTGGCAATTCAACGCTAGAAAAATAAAAGGCGACATGCTTACTTATTTCGGTGCTAATGGTAGCGTCTTAGTTGATAACACTAAAAATGTCACAGTTGACGGACAAACAGGTTTAAGACTTGGTGCAGACTTGTTTTATAACTGGAGTGATAAAGCAGTCACAGACGGTTGGGAATTGCATTATATTTCTTTTACTACTGCTTCAACGCTTCCAACATCTAAAACATTTCGCTTTAGAATGAATGCAGGTAGTGAATGGCATGTAAAGAATATCCAAATCACAGAGGGGGAAGGACCTAAACCATTCCAACTTTCAGAAGCAGACAGATACAAGTACACACAGTACCAAATGGACAAAGGACACAGAGAAATTTATCCTAACTTTGGTTTCTATTATAGTGAAGAATTTGATTTCTGTTGTGCTTATAAAGTCAATATCCATTCAGGTTTTGAAACTGTTGATTTTAACCCTGTTGAACAGAGTTATACAATTAGATGTGAGGTTGAAAACTTTGCTCAAATATTAAACCCAGTTAAAGAGTATTATATCAAAGTACCAAGCAGTTGCACTTTTGATAATAGCATACTAATGAACCCTACAACAGAAAGAGGAGGTAATTACTTACTAGAATGTAAAGCTAAAGGATTACACTTACAAGTGTTTGAACAACCTGACGGAGATTATAGCAGAAGTCAGAACAGAAAAGTGTACTCAAACATGTATGATAATTTAAGTAATAAATTATGGAACGTTTATGGTGGCTTTGTGTATACTGGAGAACTACAAACGTACAAAGTAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8a791f62b995c792529818f9bfca28a932a2062cbdb3ea26614ca05d0542b57b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5214
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50