Protein

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Genbank accession
XIJ71407.1 [GenBank]
Protein name
holin
RBP type
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MPVVWHCGFNGFINNTMSQGQAGLVITTNNTQAASTAMDSNNMINNVFGRGGNGDQNGGALPLIRYYGRKYTPGGSYVASYVFGRVKPSFFDNSVPCLSNELYQPSTLSDWFAGWEFRIDTLFPNDYATASWRIGFRIGRATHPTYQIGYNVKICPAGINAAETVTLFTVPIAAGQPEKYVEIEWISDTKTLNIYQDDELVSTRPNFTASSMAYGFIMMCELYVGNSFSTTPFFGFEVRDMYIQRILSDADQRLGSSTRVYTFNPVTDDVVQFARPEGFDSNASVVLTPIGSVGTTPAPSVSTAVLSGDVVGQQDLYNVDISKVSTRLASVEAVNIRTMARNPLLGNRQSAAIAKSGATQTQSDKTSKLEQGGLWRFNTLQMVSDPADGSRWTLAKLAGLKVGTKFVA
Physico‐chemical
properties
protein length:408 AA
molecular weight: 44474,50390 Da
isoelectric point:6,18365
aromaticity:0,11029
hydropathy:-0,14853

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XIJ71407.1
1 408
Domain Start End Length (AA) Confidence
N-terminal 1 70 70 0,0037
Central domain 71 269 200 0,1214
C-terminal 270 408 138 0,8641
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-70
Central
71-269
C-terminal
270-408

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage HMD-P1
[NCBI] 		3374761 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XIJ71407.1 [NCBI]
Genbank nucleotide accession
PQ471667 [NCBI]
CDS location
range 21204 -> 22430
strand -
CDS
ATGCCTGTAGTATGGCACTGCGGTTTTAATGGTTTTATTAACAATACAATGAGTCAGGGGCAAGCGGGACTGGTTATCACCACTAACAATACCCAAGCGGCGTCCACCGCTATGGACTCTAATAACATGATTAACAACGTCTTCGGGCGCGGAGGAAATGGCGACCAAAATGGCGGGGCGTTGCCCTTAATTCGGTATTACGGGAGGAAATATACACCGGGGGGTAGTTATGTTGCTTCTTACGTTTTTGGCAGGGTGAAGCCCTCTTTCTTTGATAATTCCGTGCCGTGCCTTAGCAACGAATTGTACCAACCATCTACGCTTTCAGACTGGTTCGCAGGGTGGGAATTTCGTATCGATACGTTATTTCCTAATGACTACGCGACCGCAAGCTGGCGTATTGGATTCAGAATTGGCCGTGCGACACACCCTACCTATCAAATCGGGTATAACGTTAAGATCTGCCCGGCAGGCATCAACGCGGCTGAAACTGTTACTCTTTTCACGGTTCCAATCGCGGCGGGACAGCCTGAAAAATACGTGGAAATTGAATGGATCTCAGATACCAAAACTTTGAATATCTATCAGGATGATGAACTGGTTTCCACTCGCCCAAACTTCACGGCGTCCTCAATGGCATACGGTTTTATCATGATGTGTGAACTGTACGTCGGTAACTCGTTTAGCACGACTCCGTTTTTTGGATTTGAAGTACGCGATATGTACATCCAACGTATTCTTTCTGACGCAGACCAACGATTAGGGTCATCCACGCGAGTATATACGTTCAACCCTGTGACGGATGATGTTGTGCAGTTCGCCCGGCCCGAAGGTTTTGATTCTAACGCCTCGGTCGTCCTGACGCCGATTGGGTCGGTCGGCACAACTCCTGCACCGTCTGTTAGTACTGCGGTTTTAAGCGGGGACGTTGTTGGACAGCAAGACCTGTATAACGTAGATATTTCAAAAGTTAGCACTCGTCTGGCATCGGTAGAAGCGGTTAACATCCGAACGATGGCCCGAAACCCGTTGCTAGGGAACCGCCAGTCAGCCGCGATCGCTAAATCCGGGGCGACACAAACCCAAAGCGATAAAACTTCGAAACTCGAACAGGGCGGTTTATGGCGGTTTAATACGCTGCAAATGGTGTCAGACCCTGCCGACGGATCACGCTGGACGCTTGCTAAATTGGCCGGGCTTAAAGTCGGTACCAAATTCGTCGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9b1f4721b65ccfd9b5fc5b9d0357ee946eb4a7cfb91365081bec516a7d74cfc7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5877
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50