Protein

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Genbank accession
YP_009878886.1 [GenBank]
Protein name
neck passage structure
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSNGDYSPKANQTDLESLQHTVNNQSATISTKANQTDLDNLQATVDKQGVAISTKAEQSELSITNKNVTTAQETAKQAESEAKNAMAKATEAQANSLPLNGNAVSASKLETARKLGVNLQASAFQNFDGTADATNIGVSGVLPISNGGTSTSDGVINTIAYSNSADGTDGFTTVYPNLNLLDGTKDFSGDWINARAWDKNGTYKGLTVVSYNGAYNAGIAKGFTIPSDGIYSFSIIVKVKTGYVGQFIVETYKPTGVPAVTINVTDTGGKFVIQSYTGSFKAGQEIAMYFRFDSGATIKGGLEVAGHKIEHGETPTPYMPSASEVTVADYPKYVGFSNIIKPNKKSSDYKWLPMGLVAIDSATGSLKPAVIGIDYAQAHPVGSVVTNNSNLSSGYSTGKWENIGSAVIGLTTIYYWKRTA
Physico‐chemical
properties
protein length:420 AA
molecular weight: 44289,64270 Da
isoelectric point:5,88076
aromaticity:0,08571
hydropathy:-0,28000

Domains

Domains [InterPro]
DC_0775
STR
2–34
DC_0775 Coil
DC_0775
STR
29–420
DC_0775
YP_009878886.1
1 420
Architecture
STR
STR 2-420
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage LP9207
[NCBI] 		2027250 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009878886.1 [NCBI]
Genbank nucleotide accession
NC_049417 [NCBI]
CDS location
range 7263 -> 8525
strand +
CDS
ATGAGTAACGGAGATTACTCCCCTAAAGCTAATCAAACAGATTTAGAAAGTTTACAGCATACTGTTAATAACCAATCGGCGACTATTTCAACAAAAGCCAATCAAACGGATTTAGACAACTTACAAGCTACTGTTGATAAACAAGGTGTTGCAATTTCAACAAAAGCTGAACAATCAGAGTTATCAATCACAAATAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTACCACTTAATGGCAATGCGGTCAGTGCAAGCAAACTGGAAACAGCTAGAAAACTTGGAGTAAATCTCCAAGCCTCAGCGTTTCAAAACTTTGACGGGACTGCTGACGCAACTAATATTGGAGTTTCAGGGGTGCTGCCTATTTCAAACGGTGGTACTTCAACAAGTGACGGAGTTATAAATACAATAGCTTATTCCAACAGCGCAGACGGCACTGACGGTTTCACCACTGTTTATCCTAATTTGAATCTATTAGACGGAACTAAAGATTTTAGTGGGGATTGGATTAATGCACGTGCTTGGGACAAGAATGGTACTTATAAGGGTTTGACTGTGGTGTCATACAATGGAGCTTATAACGCAGGTATAGCTAAAGGTTTTACTATCCCTTCCGACGGTATTTATTCATTTTCTATAATTGTTAAAGTAAAAACTGGTTATGTCGGTCAATTTATTGTTGAAACGTATAAACCAACAGGGGTACCTGCTGTTACAATAAATGTAACCGATACAGGTGGGAAATTTGTAATTCAGTCTTATACAGGTAGTTTTAAAGCAGGTCAAGAGATTGCAATGTATTTTCGGTTTGATAGTGGAGCCACTATTAAAGGTGGTTTAGAGGTCGCAGGGCATAAAATTGAACACGGAGAAACACCAACTCCATACATGCCATCAGCTAGCGAAGTCACGGTTGCAGACTATCCGAAGTATGTAGGGTTTAGTAATATCATTAAACCTAATAAGAAAAGTTCTGATTACAAATGGTTACCAATGGGGTTAGTAGCAATTGATAGTGCTACTGGCTCACTCAAACCTGCGGTTATAGGTATAGATTACGCTCAAGCTCACCCAGTTGGCTCGGTAGTCACAAATAACTCAAATTTGTCATCAGGGTATTCCACAGGAAAATGGGAAAATATCGGTTCAGCAGTAATTGGTTTAACAACAATATATTATTGGAAACGTACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f84be46087dae6baf299051de566ce2ae947f8df8067bd2171a316ad76e80f6f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7183
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Rates of mutation and recombination in Siphoviridae phage genome evolution over three decades Kupczok,A., Neve,H., Huang,K.D., Hoeppner,M.P., Heller,K.J., Franz,C.M.A.P. and Dagan,T. 2018 — GenBank