Protein

View in Explore
Genbank accession
WBK39846.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MALEIGTTLTGGETISDINTAFDTSSNDFQQIYYCRGRNITFENVTIDCNPNGNSFPSYGIQLAPGAEVSLINCNISNASSTALYSTSADVYAKNSTFNNCGITGLGTGTGGCYTVLVNCQANDNMIAGFSLWRGEAHLSNCSAANNYYHGMVVAWGSGYFDNCTTGNNGDDSLPTNYGYGIVYTYGGEVGRVKNCTSIGNLSGGFAVDIERPNDGTYFPVDISFDDCRILEHSNFGAYGGVGIWVNHVAAGLNVERCLIQNCHRIGISCVGGNSIFHRNIIDTSNVGIAFYEGEGDIIGGNIAERNSFISCNTDFVDQQTLWNKTEVSNWAR
Physico‐chemical
properties
protein length:333 AA
molecular weight: 35711,84850 Da
isoelectric point:4,48428
aromaticity:0,10811
hydropathy:-0,14925

Domains

Domains [InterPro]
IPR012334
STR
2–240
IPR012334 IPR006626
IPR039448
ENZ
24–137
IPR039448 IPR006626 IPR006626 IPR006626
IPR011050
STR
30–208
IPR011050
IPR006626
Unmapped
37–65
IPR006626 IPR006626 IPR006626 IPR011050
WBK39846.1
1 333
Architecture
STR
STR 2-308 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBK39846.1
1 333
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4959
Central domain 11 322 313 0,9960
C-terminal 323 333 10 0,2722
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-322
C-terminal
323-333

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacteraceae phage LS06-2018-MD06
[NCBI] 		3003839 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBK39846.1 [NCBI]
Genbank nucleotide accession
OP947162.1 [NCBI]
CDS location
range 30251 -> 31252
strand -
CDS
ATGGCACTAGAGATTGGAACTACGCTAACTGGTGGAGAGACGATATCTGACATAAATACAGCATTTGATACATCGTCAAATGATTTTCAACAGATATACTATTGCCGTGGCAGGAATATAACATTTGAAAACGTCACAATAGACTGCAACCCAAATGGCAACAGTTTTCCATCTTACGGAATTCAACTGGCTCCAGGTGCAGAGGTCTCTCTGATAAACTGCAACATCTCAAACGCCTCAAGTACCGCCCTCTACTCAACGTCTGCAGATGTCTATGCCAAGAATAGCACATTCAATAACTGTGGCATCACAGGGCTTGGAACTGGAACCGGCGGCTGCTATACGGTACTTGTTAACTGCCAGGCGAATGACAATATGATAGCCGGTTTTAGTCTTTGGAGGGGCGAGGCCCATCTTTCAAACTGCTCCGCTGCGAATAACTACTATCATGGCATGGTCGTGGCTTGGGGTTCTGGATATTTTGACAACTGTACTACAGGCAACAACGGTGACGACAGCCTGCCAACAAACTATGGATATGGAATTGTTTATACCTATGGAGGAGAAGTCGGAAGGGTAAAGAACTGCACATCTATTGGTAACCTCTCTGGCGGTTTCGCTGTTGATATAGAGAGACCAAACGACGGTACATATTTTCCAGTTGATATATCGTTTGATGATTGCAGAATTCTAGAGCACTCCAATTTTGGCGCGTATGGCGGTGTTGGAATTTGGGTTAACCATGTTGCAGCCGGCCTTAATGTTGAAAGATGTCTTATTCAGAACTGTCACAGGATTGGAATATCATGCGTTGGTGGCAATAGCATCTTTCACAGAAACATTATAGATACTTCAAATGTTGGCATAGCGTTCTATGAGGGCGAAGGCGATATCATCGGCGGGAATATAGCTGAGAGAAACTCATTTATCAGCTGCAACACCGATTTCGTAGACCAGCAAACCCTTTGGAACAAAACGGAGGTAAGCAATTGGGCAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
69a570a6b833aa093b53f08f79c4602047374062f80364b46ffcfa00162f4f56
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8605
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank