Protein

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Genbank accession
BAK53519.1 [GenBank]
Protein name
distal tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MLIDFTKETLSLYTSSEDYFPVLVTRVVDYKEAEEGKPDFYLLGVRTDLPQQIITILHPFRNEIPVEPGDYILVKRLSAGYSIFVAKLNKKFDEENRENERFIFKPTIPQFSDKKSFGQSYNSSLINLTYTGSYLKKEPDALYKRFVEFPSYDLYRSSYDVFNYDEKFWEILNDKNEDEISRKYIFHLSENPTYKDYLLDRNKDENFPFRPDLVFDFTHEYSPQNKQDKLLKLDKKITLFTEVDTDKYPFLQAKEEVGENLALTSYDEILNTKADGYLGEDIFYAQEFREIKLGRNKIGLYKISKNDSFLLLKTSKDQQFAAINFENKSQLRIRNDDGSSILLEKGEGFNRTFISTYPSLLFEQFYKESYQHVLILNAEKEGFKNLQKSSSGLEDYSFGLFLRGNKDGSLKRTDFTYKNALSGGQSVVFGTKRQSSFSYITLSSDSYKSIFNTHVENSTYVDILADSSSGCFKVENNKNGVKKFTFCADQFVIEDYLTVHKDLLVNGNTQLQGNLNVLGTTSLTTTYVNGILIVSGDVWIQGTLYQTSDARFKTNLEPIQDALEKLGQITGYTFEMRGKRLAGLIAQEVQNVLPEAVDVDQNGYLQLNYNAVVALLVEALKEKKKKIDELEDRIKKIEEFLKG
Physico‐chemical
properties
protein length:643 AA
molecular weight: 74214,67910 Da
isoelectric point:5,28002
aromaticity:0,12908
hydropathy:-0,50840

Domains

Domains [InterPro]
DC_1202
STR
199–642
DC_1202
IPR030392
CHP
548–597
IPR030392 Coil
IPR030392
CHP
548–634
IPR030392
BAK53519.1
1 643
Architecture
STR
STR 199-642 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAK53519.1
1 643
Domain Start End Length (AA) Confidence
N-terminal 1 469 469 0,8740
Central domain 470 632 164 0,1536
C-terminal 633 643 10 0,9650
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-469
Central
470-632
C-terminal
633-643

Taxonomy

  Name Taxonomy ID Lineage
Phage Thermus phage phiYS40
[NCBI] 		407392 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Thermus thermophilus HB8
[NCBI] 		300852 Bacteria > Deinococcus-Thermus > Deinococci > Thermales > Thermaceae > Thermus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAK53519.1 [NCBI]
Genbank nucleotide accession
AP011616 [NCBI]
CDS location
range 7 -> 1938
strand -
CDS
ATGCTTATAGACTTCACGAAAGAAACTTTATCGCTATATACTTCAAGTGAAGACTATTTTCCAGTATTAGTTACTAGGGTTGTTGATTATAAAGAAGCAGAGGAAGGAAAACCAGATTTTTATCTATTAGGTGTAAGAACAGACTTACCACAACAAATAATAACGATACTTCATCCTTTTAGAAACGAAATACCAGTTGAACCTGGAGATTACATACTTGTAAAGCGTTTAAGCGCTGGATATTCTATTTTTGTTGCAAAATTAAATAAAAAATTTGATGAAGAAAACAGAGAAAACGAAAGGTTTATATTTAAGCCAACAATACCTCAATTTTCTGATAAAAAATCTTTTGGTCAATCTTACAACTCTTCTCTTATAAATCTAACCTATACTGGTTCTTACCTAAAAAAAGAACCAGATGCACTTTACAAAAGATTTGTTGAATTTCCTTCTTATGACCTTTATAGGTCAAGTTATGATGTCTTTAACTACGATGAAAAATTTTGGGAAATATTAAACGATAAAAACGAAGACGAAATTTCAAGAAAGTATATTTTTCACTTATCAGAAAACCCAACTTACAAAGACTACTTATTAGACAGAAATAAAGACGAAAACTTTCCCTTTAGACCAGATTTAGTATTTGACTTTACACATGAATATTCGCCCCAAAATAAACAAGATAAGCTACTAAAGTTAGACAAAAAAATAACCCTATTTACAGAAGTTGATACAGATAAATATCCTTTTCTCCAAGCTAAAGAAGAGGTTGGCGAAAATTTAGCGCTAACATCTTATGATGAAATTTTGAATACAAAAGCAGATGGTTATCTTGGAGAGGATATATTCTATGCGCAAGAGTTCAGAGAAATAAAATTAGGAAGAAATAAAATTGGTCTTTATAAGATAAGCAAAAATGACTCTTTCCTACTTTTAAAGACAAGCAAGGACCAACAGTTTGCAGCAATTAATTTTGAAAATAAAAGTCAATTAAGAATAAGAAACGATGATGGTTCATCTATTTTGTTAGAAAAAGGTGAAGGATTTAACAGAACTTTTATCTCAACCTATCCTTCACTATTATTTGAACAGTTTTATAAGGAAAGCTATCAACATGTCCTTATTTTGAATGCGGAAAAGGAGGGCTTTAAAAATTTACAAAAATCCTCTTCCGGCTTAGAGGATTACTCGTTTGGACTATTTTTAAGAGGAAATAAAGATGGTTCCTTGAAAAGAACAGATTTTACTTATAAAAATGCCTTAAGTGGAGGTCAATCAGTAGTTTTTGGTACCAAAAGACAAAGTTCTTTTTCCTACATTACGTTATCTTCAGATTCTTATAAATCAATTTTTAACACACATGTAGAAAACTCTACTTATGTTGACATTTTAGCTGACTCTTCCAGCGGATGTTTTAAAGTAGAAAACAACAAAAACGGCGTAAAAAAGTTTACATTTTGTGCAGACCAGTTTGTTATTGAAGATTATTTGACAGTCCATAAGGACTTATTAGTTAACGGAAATACACAATTGCAAGGAAACTTGAATGTTTTAGGAACAACATCACTTACAACTACATATGTTAATGGAATCCTAATAGTAAGTGGAGATGTGTGGATACAAGGCACTCTGTACCAAACCTCCGATGCTAGGTTTAAGACCAACCTTGAACCAATTCAAGACGCTTTAGAAAAACTCGGGCAAATCACCGGTTATACCTTTGAAATGAGAGGTAAGCGTTTGGCCGGGTTGATTGCTCAGGAGGTTCAGAATGTCCTACCTGAGGCAGTTGATGTAGATCAGAATGGTTATTTACAGTTAAACTACAACGCTGTTGTAGCACTCTTAGTTGAAGCCTTAAAAGAAAAGAAAAAGAAAATTGATGAGTTAGAAGATAGAATAAAAAAGATTGAGGAATTTTTGAAGGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5794c3af3375de52d7748c82f40b7a57c787a7844b313f4419976e37e9c57c84
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4844
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of the large Myoviridae bacteriophage varphiTMA of the extreme thermophile Thermus thermophilus Tamakoshi,M., Murakami,A., Sugisawa,M., Tsuneizumi,K., Takeda,S., Saheki,T., Izumi,T., Akiba,T., Mitsuoka,K., Toh,H., Yamashita,A., Arisaka,F., Hattori,M., Oshima,T. and Yamagishi,A. 2011 22164349 GenBank