Protein

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Genbank accession
WPK19870.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFGRIITSSKKNIQPSVTKIASSDTTVFALMSDGTLYSRGSQEFGQMGIGNIIGTTDMTLYSKYTLCSQITNTYTVKDYTTNSSYFAFAIANNNSTNKLFAYHGGGQYFGQLANGSTSQTYISLRQTTQAPGDIIRSSVGYSYFSNHIITSLGVYATGNNTGDNAGQLGIGTQTDV
Physico‐chemical
properties
protein length:178 AA
molecular weight: 19098,94050 Da
isoelectric point:8,62563
aromaticity:0,11236
hydropathy:-0,22809

Domains

Domains [InterPro]
IPR009091
STR
6–178
IPR009091
IPR009091
STR
18–176
IPR009091
PF13540
STR
19–48
PF13540
WPK19870.1
1 178
Architecture
STR
STR 6-178
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK19870.1
1 178
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,8704
Central domain 12 167 157 0,0629
C-terminal 168 178 10 0,9365
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-167
C-terminal
168-178

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-1_S14
[NCBI] 		3096172 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK19870.1 [NCBI]
Genbank nucleotide accession
OR699183 [NCBI]
CDS location
range 146104 -> 146640
strand +
CDS
ATGCTACCCTTTGGAAGAATTATCACATCATCAAAAAAGAACATACAACCTTCTGTTACAAAAATAGCTTCATCTGATACAACAGTTTTTGCCCTTATGTCAGATGGTACGTTGTACAGTAGAGGCTCTCAAGAGTTTGGGCAAATGGGTATAGGTAATATTATAGGTACAACCGACATGACGTTATATTCAAAGTACACGTTGTGTTCTCAAATAACTAATACCTATACAGTAAAAGATTATACAACAAACTCAAGTTACTTCGCTTTTGCTATAGCAAATAATAATAGTACTAATAAATTATTTGCATATCATGGTGGTGGTCAATACTTTGGTCAGTTAGCAAATGGTTCTACATCACAAACATATATTTCGTTAAGACAAACAACACAAGCACCAGGTGATATAATAAGAAGCAGTGTAGGTTATTCATATTTTTCTAATCATATTATAACTTCATTGGGTGTTTACGCAACTGGTAATAACACAGGCGATAACGCAGGACAATTGGGTATAGGTACACAAACAGATGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f5e08fa55f14408d1752b0feb7a6773fbf03d17b2d10c79ec2f2d0750bad0b39
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7561
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank