Protein

View in Explore
Genbank accession
YP_009279770.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MANTTLTQFPAGQTQYKINFDYLARPFVVVTLVNSNDAALNRVLTAGNDYLFLNPTTIEILTSQAGFDILQIHRFTSTDLLVDFRDGSVLTATDLTNSELQAIHIAEEGRDQSTGLAKQYADQAVEAGKDAQDILNQIILLGKNGYTPVGSFENGGTVRIQNDVLQYGSGTATTHWRWEGTLPKVVPAGSTPTSAGGIGKGKWIDVTDATLRGQLAGTGGASMVKASDGRTVEQWLVQSDSASYRAKNMAKLAWVDYQVHNRGSIKSCFLGDSMTAGFDRTSSDVIPPQDGDWATRASMNYPYRFASYLAEQSGCTSTVVMRAISGHTAKQAYEQAEWQTNPNCDIVFIMYAINDSGGVAGATLDIYMEYMEKLIRRYIDWGCAVVVQRPSGGGQGAGNPRWLHWAKRLQMVARVYGCPIFDAHEVMFYRHYAAVQSDGTHYNSMGYAIHGEKLASMLMAGGLLDTYRPVVNEITVWTGMMSDRVGWCDAMGNIGAFRSDGAFTRTKITGRLPGSTRVVTTFSFYLDAEAAHIYGKFLGKMNVIMTNSRWWNNNAQPYYQYADDQPHSFGMSLERTPKSPNDFSGASGSRKFIGRVIGRGWHTLTFFKALDGTDPTESFINSLTIQPIPLGLSTEQMWGQDEERRYKVVHTRKLPSPSGQGNNLPQATTLSSFHMRVPQSVLGTGPGVRCLPTPYFYNTIPATLRITDEKGTYIEFLVYKNGSSGLTWTGKVLKSTLAEASYPTLTAQLATAKQSVVRAAGQDGTNMPLENIYDFNGGLHPQNSSASDISWRGGIYFLFTLTWPGTAPTGYWNIELEGSDWFGNSESSFGAF
Physico‐chemical
properties
protein length:832 AA
molecular weight: 91333,51430 Da
isoelectric point:6,36679
aromaticity:0,10938
hydropathy:-0,28606

Domains

Domains [InterPro]
IPR005604
ATT
12–115
IPR005604 G3DSA:2.10.10.80 IPR036514
DC_0018
ATT
36–349
DC_0018 DC_0640
IPR040775
RBD
150–208
IPR040775 SSF52266
cd00229
ENZ
269–456
cd00229
IPR013830
ENZ
269–449
IPR013830
YP_009279770.1
1 832
Architecture
ATT
STR
RBD
ATT 12-349 | STR 350-459 | RBD 460-829 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009279770.1
1 832
Domain Start End Length (AA) Confidence
N-terminal 1 242 242 0,9958
Central domain 243 492 251 0,5950
C-terminal 493 832 339 0,6739
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-242
Central
243-492
C-terminal
493-832

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage SH4
[NCBI] 		1805467 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009279770.1 [NCBI]
Genbank nucleotide accession
NC_031018.1 [NCBI]
CDS location
range 32962 -> 35460
strand +
CDS
ATGGCTAACACCACTTTGACTCAGTTCCCTGCTGGTCAGACTCAATATAAGATTAACTTCGACTATCTGGCGCGACCGTTCGTAGTGGTGACTTTGGTCAACAGTAACGATGCGGCCCTTAACCGAGTTCTGACTGCTGGTAATGACTATCTGTTCCTGAATCCTACCACTATCGAAATCCTCACGTCTCAGGCCGGGTTCGACATCCTTCAGATTCACCGCTTCACATCTACAGACCTTCTGGTCGATTTTCGCGACGGCTCTGTCCTTACGGCTACAGACCTGACTAACTCAGAGCTTCAGGCCATTCACATCGCTGAAGAAGGTCGCGACCAGTCTACAGGCTTAGCCAAGCAGTACGCGGACCAAGCAGTAGAGGCTGGTAAGGACGCTCAGGACATCCTGAATCAGATTATCCTTTTGGGTAAGAATGGTTACACTCCTGTAGGCTCATTCGAGAACGGCGGTACTGTGCGTATTCAGAACGATGTGCTCCAGTACGGGTCAGGAACCGCAACGACCCACTGGCGCTGGGAAGGTACTCTGCCTAAGGTAGTACCCGCTGGTTCTACCCCAACGTCTGCTGGCGGTATCGGCAAGGGTAAATGGATTGACGTAACTGATGCGACTTTACGCGGACAACTGGCTGGTACTGGCGGTGCCTCTATGGTAAAAGCCTCAGATGGTCGTACCGTTGAGCAGTGGCTCGTCCAGTCTGACTCTGCGTCTTACCGTGCGAAGAACATGGCTAAGCTGGCTTGGGTAGACTATCAGGTCCACAACCGTGGGTCCATCAAGTCCTGCTTCTTGGGCGACTCAATGACTGCTGGTTTCGACCGGACGTCCTCTGACGTTATCCCACCTCAGGATGGGGACTGGGCGACCCGTGCGTCTATGAACTACCCGTACCGCTTTGCGTCTTACCTAGCTGAGCAGTCCGGCTGCACATCAACGGTTGTTATGCGAGCAATCTCCGGTCACACAGCTAAGCAGGCGTATGAGCAGGCTGAATGGCAGACAAACCCGAACTGTGACATCGTGTTCATCATGTACGCGATTAACGACTCGGGTGGCGTTGCTGGTGCGACTCTTGATATTTACATGGAGTACATGGAGAAGCTGATTCGTCGCTACATCGACTGGGGCTGTGCTGTTGTTGTTCAACGTCCTTCAGGCGGTGGTCAGGGAGCTGGGAACCCAAGGTGGCTGCACTGGGCCAAGCGTTTACAGATGGTTGCCCGTGTATATGGCTGTCCAATCTTTGACGCGCATGAGGTAATGTTCTATCGTCATTACGCTGCCGTGCAGTCTGATGGGACCCACTACAACTCTATGGGCTACGCGATTCACGGAGAGAAACTGGCTTCCATGCTCATGGCTGGCGGACTTCTGGATACCTACCGTCCGGTGGTTAATGAGATTACCGTATGGACCGGGATGATGTCAGACCGAGTTGGCTGGTGTGATGCTATGGGGAACATTGGAGCCTTCCGTTCTGACGGAGCGTTCACCCGTACTAAGATAACTGGTCGTCTTCCGGGAAGCACACGAGTGGTCACTACCTTCAGTTTCTATCTGGATGCTGAGGCCGCGCACATCTACGGTAAGTTCTTAGGGAAGATGAACGTCATCATGACCAATAGTCGCTGGTGGAACAACAACGCTCAGCCGTACTACCAGTACGCTGACGACCAGCCTCACTCCTTCGGTATGTCCCTTGAGCGAACCCCTAAGTCACCTAATGACTTCTCAGGTGCTTCTGGCTCCCGTAAGTTCATCGGTCGAGTCATTGGGCGTGGTTGGCATACTCTGACGTTCTTCAAGGCTCTGGACGGAACAGATCCCACTGAGTCTTTCATCAACAGTCTGACTATTCAGCCCATCCCGCTTGGATTGTCGACTGAGCAGATGTGGGGTCAGGACGAGGAGCGGCGCTATAAGGTTGTGCATACCCGCAAGCTGCCAAGTCCATCTGGACAGGGGAACAACCTGCCTCAGGCTACCACACTGAGTTCCTTCCATATGCGAGTGCCACAAAGCGTTTTAGGGACTGGTCCGGGGGTTCGGTGCCTTCCGACACCATACTTCTACAACACTATCCCTGCCACTCTCAGAATCACAGACGAGAAGGGAACGTACATTGAGTTCCTCGTTTACAAGAACGGTTCGTCTGGCCTGACTTGGACTGGTAAGGTGCTGAAGTCAACACTGGCGGAAGCCTCCTATCCTACCCTTACAGCTCAGCTCGCAACGGCTAAGCAGTCTGTGGTCAGGGCTGCGGGTCAGGATGGTACGAATATGCCTCTGGAGAATATCTATGACTTCAATGGAGGACTTCATCCTCAGAACAGCTCAGCGTCTGACATTTCGTGGAGAGGGGGTATCTACTTCCTGTTCACCCTTACGTGGCCGGGTACTGCACCAACTGGTTACTGGAACATTGAGCTTGAAGGATCTGACTGGTTCGGAAACTCCGAGTCTTCCTTCGGTGCTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0b34b1adc7ec4c44aa49d0af735db18a8e7f628711e92aa4816ace3f018a5c14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6121
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of five Podoviridae phages infecting Citrobacter freundii Hamdi,S., Rousseau,G.M., Labrie,S.J., Saied Kourda,R., Tremblay,D.M., Moineau,S. and Ben Slama,K. — — GenBank