Protein

View in Explore
Genbank accession
YAB57849.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQLFTMPVELGQEFRKVTIINFRDIVFEINKGKVALNDHKNKDKVAHKSKQISHFDKDLETILINFKKRLESHIIGANGDGIAELTDSRVSRDGKRFNIFNDRIDYEFQQTEKLFEQKYKEVYGLATRLRNVNDFGADPTGEKDSTEAFEKAFENGGYHVHMTEGTYKVRGIKLPSNSILSGEGKGVTTIKMNDDAPQENIVVTNRDVDGTAKNITVKDFSINGNKFRQEGTLKAAGGSRSSNLRYAGVTNGYIYNIESYDALLHGIDVTYASDDYFYEGDNVRVEEQLESNFIHIDNCETYGFGDDGITTHHSKFLNITNNYSHHPTGGGNNNGIEIDDGSRYVMLSGNTTKQNFGGLEIKAHGTATAPSGVFVNNHLSIEDTRSYNVRHIGHHRAATDVKSKSAHDVVLNNITSIYPYANNTYENVTPRALVISAYDGVVCNNVTCIGDGRFQAGQPAIAVQFMSQNIVISNVNITGFKNAMADMKVFGGNNGGNKIKFANVNIHDSSVNIGIAGGAGVEGFGIYNANLTGSGKGNGIELYNHYAEIVGVDAVNYEYAADIAGNKYEVVPTYMNGGASIASTGGGAISERSVVLASSNGTFAYDKNSFVIASNMGSEAYGSRSGVINSSNSRTKKDGFAQTIMNSRSVESLGNYHFQMGYGEDEKPKASNTKIDISAFSGNVRTAGYLKSGQDIGDIGEYFESKTGEKIENGYIVTLEGRYIRKAGPDDEPVGIVSGTAALVMGDQLFHHKSKYKKDEFGVVIKSVQMVENVDDEGNIHRELVELPVVNEDYDNQNEEDYIPRSQRDEWCVVGINGQIYTRIDETVENGDKITAMRGVGTKDNANGYYYVEEITTPYDAEKGYGVALVFVK
Physico‐chemical
properties
protein length:873 AA
molecular weight: 95754,81920 Da
isoelectric point:5,41041
aromaticity:0,09278
hydropathy:-0,49885

Domains

Domains [InterPro]
DC_0125
ATT
1–238
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 DC_0616 IPR021865
IPR012334
STR
124–575
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
128–448
IPR011050 IPR006626 IPR006626 G3DSA:4.10.80.40
IPR024535
ENZ
130–358
IPR024535
IPR006626
Unmapped
212–248
IPR006626
YAB57849.1
1 873
Architecture
ATT
STR
RBD
ATT 1-238 | STR 239-642 | RBD 643-873
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAB57849.1
1 873
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9901
Central domain 145 654 511 0,9889
C-terminal 655 873 218 0,9089
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-654
C-terminal
655-873

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Cicami
[NCBI] 		3446831 Viruses >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAB57849.1 [NCBI]
Genbank nucleotide accession
PV956268 [NCBI]
CDS location
range 18843 -> 21464
strand +
CDS
ATGCAACTATTCACTATGCCCGTTGAATTGGGGCAAGAATTTAGAAAGGTAACCATTATTAATTTTAGAGATATTGTTTTCGAAATTAATAAAGGTAAGGTCGCGTTAAACGATCATAAAAACAAAGACAAAGTGGCACATAAAAGTAAACAAATTTCCCACTTTGACAAAGATTTAGAAACAATTTTAATCAATTTCAAAAAACGATTAGAGTCTCACATCATAGGTGCAAATGGCGACGGTATAGCAGAGCTTACTGATAGCCGAGTATCTAGGGACGGAAAAAGATTTAATATTTTCAATGACCGTATTGATTACGAATTCCAGCAAACGGAAAAGTTATTCGAACAAAAGTATAAAGAAGTCTATGGTTTGGCTACTCGTCTAAGAAATGTAAATGACTTTGGTGCTGATCCAACAGGAGAAAAAGATAGTACAGAAGCCTTTGAAAAAGCGTTCGAAAACGGTGGCTATCATGTACATATGACTGAAGGTACTTATAAAGTAAGAGGTATTAAATTGCCTAGTAACTCAATTTTAAGTGGGGAAGGCAAAGGCGTTACAACTATTAAAATGAATGATGACGCCCCTCAAGAAAATATTGTCGTTACAAATAGAGATGTAGACGGTACAGCTAAAAACATCACTGTTAAAGACTTTAGTATCAATGGTAATAAGTTCAGACAAGAAGGCACATTAAAAGCTGCTGGCGGCTCACGTTCAAGTAACTTACGCTATGCAGGTGTTACTAATGGATATATTTATAACATCGAAAGTTATGACGCACTATTACATGGTATAGACGTTACATACGCGTCTGATGATTACTTCTATGAAGGAGATAACGTACGTGTTGAGGAGCAATTAGAAAGTAACTTCATTCATATCGACAACTGCGAAACGTACGGTTTCGGAGACGACGGTATTACAACACACCACTCTAAATTTTTAAATATCACAAACAACTATTCACACCACCCTACAGGTGGAGGTAATAATAACGGTATCGAAATAGATGACGGTTCAAGATATGTGATGTTAAGTGGTAATACAACAAAACAAAACTTTGGTGGGCTTGAAATCAAAGCGCATGGTACAGCTACAGCGCCGAGTGGCGTGTTTGTTAATAACCATTTATCTATTGAAGATACAAGAAGTTATAACGTTAGACACATAGGACATCACAGAGCCGCAACAGATGTTAAGAGTAAATCAGCTCATGACGTTGTACTTAATAACATTACATCTATTTATCCATACGCAAACAATACATATGAAAATGTTACGCCTAGAGCGTTAGTTATTAGTGCTTATGACGGTGTCGTATGTAACAACGTAACATGCATAGGCGACGGACGTTTCCAAGCAGGCCAACCAGCAATAGCAGTTCAATTTATGAGCCAAAACATTGTCATTAGTAACGTGAACATCACAGGCTTCAAAAACGCTATGGCAGACATGAAAGTATTCGGTGGCAATAACGGTGGTAATAAAATCAAGTTTGCTAACGTTAACATTCACGACTCATCTGTGAATATTGGTATTGCAGGTGGTGCAGGCGTCGAAGGCTTTGGTATTTATAACGCTAACTTAACTGGATCCGGTAAAGGTAACGGAATAGAACTATACAACCACTACGCAGAAATTGTAGGTGTTGACGCAGTTAACTATGAATACGCAGCAGACATCGCCGGCAACAAATACGAAGTAGTGCCAACATATATGAATGGTGGCGCAAGTATAGCTTCAACAGGTGGCGGTGCAATTTCTGAACGAAGTGTCGTTTTAGCTTCTAGTAATGGAACATTTGCATATGACAAAAACTCATTTGTTATTGCGTCTAATATGGGATCAGAGGCTTACGGATCACGTTCAGGTGTTATTAATTCATCTAATTCAAGAACTAAAAAAGATGGTTTCGCACAAACAATCATGAACTCAAGAAGTGTCGAGTCCTTAGGTAATTATCATTTCCAAATGGGTTATGGCGAAGATGAAAAACCTAAAGCATCAAACACTAAAATAGATATATCTGCATTTAGCGGTAATGTAAGAACAGCAGGATATTTAAAATCAGGCCAAGACATCGGGGATATTGGCGAGTATTTTGAAAGCAAAACTGGAGAGAAAATCGAAAACGGTTATATTGTAACCTTAGAAGGTCGATACATTAGAAAAGCTGGTCCAGATGATGAGCCGGTAGGTATTGTTTCAGGTACAGCTGCATTAGTTATGGGGGATCAATTATTCCACCATAAATCTAAATACAAAAAAGACGAATTCGGTGTTGTTATAAAATCTGTTCAAATGGTTGAAAATGTAGATGATGAAGGAAACATACACCGCGAACTTGTAGAGTTACCAGTCGTCAATGAAGATTACGACAATCAAAACGAAGAAGATTACATTCCTAGATCACAACGAGATGAATGGTGCGTTGTTGGTATCAACGGTCAAATTTATACAAGAATAGATGAAACTGTTGAAAATGGCGACAAAATAACTGCCATGAGAGGTGTCGGAACAAAAGACAATGCTAATGGCTATTATTACGTCGAAGAAATCACTACACCATACGACGCAGAAAAAGGTTACGGAGTAGCATTAGTATTCGTTAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
82cf8e589a5056fa1175c58f51f39d2dee17773ec4a7dc86fe63cbad5996f00b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8978
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequences of Staphylococcus epidermidis siphophages Cicami, Sazerac, Slasher, Southeast, Spartan, and Undine Hill,C., Akrami,A., Cichanski,S., Aslan,B. and Hatoum-Aslan,A. 1989-03 — GenBank