Protein

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Genbank accession
YP_009622473.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,62
Protein sequence
MGLEVATYINELQATNPTSSDIKSQGDDHLRVIKGAIKNTFPNITGAVTVTQTQLNSIAGDGRLVEPGLVVMWPYSVASIPAGWKVCNGTGTLRDGRAVPNLVDRFPVGAGGTIGILATGGAATHTHTLTIAETALTIAQMPSHNHGFHTINTPTTELRPGIGGAEANTGTANQYPYDYGRIQATGGGAAHGHAGSTATASNHLPPYIGMIFIIKD
Physico‐chemical
properties
protein length:216 AA
molecular weight: 22349,84380 Da
isoelectric point:6,48467
aromaticity:0,05556
hydropathy:-0,08380

Domains

Domains [InterPro]
DC_2164
STR
3–216
DC_2164
cd22641
STR
42–147
cd22641
SSF88874
STR
66–215
SSF88874
YP_009622473.1
1 216
Architecture
STR
STR 3-216
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009622473.1
1 216
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,8435
Central domain 52 205 155 0,0018
C-terminal 206 216 10 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-205
C-terminal
206-216

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Bjorn
[NCBI] 		2079288 Uroviricota > Caudoviricetes > Bjornvirus >
Host Pseudomonas sp.
[NCBI] 		306 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009622473.1 [NCBI]
Genbank nucleotide accession
NC_042103 [NCBI]
CDS location
range 5716 -> 6366
strand +
CDS
ATGGGACTTGAGGTAGCAACCTACATCAACGAACTGCAAGCCACTAACCCTACATCGAGTGACATCAAGAGTCAGGGTGACGACCATCTGCGAGTGATCAAGGGGGCTATCAAGAATACGTTCCCCAACATCACTGGCGCCGTCACAGTAACACAGACTCAGTTGAACTCGATTGCAGGTGATGGCCGATTGGTTGAACCTGGCTTGGTGGTCATGTGGCCCTACTCGGTAGCCAGTATCCCAGCAGGCTGGAAGGTCTGTAACGGTACGGGCACACTGAGGGATGGCCGAGCGGTTCCTAATTTGGTCGATCGGTTCCCTGTGGGGGCTGGTGGCACCATTGGTATCCTAGCGACTGGTGGTGCAGCAACGCACACCCATACGCTTACCATCGCTGAGACTGCTCTGACAATTGCTCAGATGCCTTCTCACAACCACGGCTTCCACACTATCAACACTCCAACCACTGAGCTTCGGCCCGGTATTGGTGGTGCTGAGGCTAACACTGGTACTGCCAACCAGTACCCTTACGATTACGGTCGTATCCAAGCTACCGGTGGTGGTGCAGCTCACGGACACGCAGGCTCTACCGCCACAGCGTCCAACCATCTGCCGCCGTACATCGGTATGATCTTCATCATCAAGGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d85c7235c88d229a45a989b38631c1f98dbc4aed5c7a2fab4e3dac40d974b506
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7669
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonas phages infecting Pseudomonas sp. isolated from Prunus avium Colberg,O., Carstens,A.B., Kot,W. and Hansen,L.H. 2013-08 — GenBank