Protein

View in Explore
Genbank accession
YP_009101025.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPRLIFKNNFEVALAQPTTTSDTTITIRSGSGFPTLGANERVVATIVDAATGLQFEIVTVTAVVGNVLTVQRAQEGTAARAWAAGDMLSIRTTAATLTGTVRNFGEIPNGINLNALTGSWFGQYHQSANAGASSALNYPVSQAGILEVYNTGVAGESCVQRYTPYWINAIYQRLYNAGSSSWSDWVQMYSTQSTIPIANGGTGQTTIQGMKTAFGFGPVADQSIVPTSMGGTGSADNAQAWLNIRPQGSTPLAGDPVNDYDAATKRWVENLVNTGTVGPSMNGVMNYGVGDFHLRNSRSYIQPYEVVADGQLLNRADWPELWAYAQMLSPIADADWLADKFKRAKYSSGNGTTTFRVPDLNGVQTGSVRALYGRGDGGNSTANGQIFESAAPNITGSAAGVSAGTYAQIFGTAVRGAFYTNNDLYPQGGGDTIPVGSGAVEGRLNTINIDASRSSPIYGAATDEIMGRNFVGVWVIRASGGFVAANTSWSVINGDAVKPAAGTLVRGGSVKSEYKIGTNVAYQAFLQAYGKIDGLTSEQGAVISNGVQEWSFNQAGTLYFPSAETQIGTLRPDGALHIDAYVRPKDVVAQPLNSVGVAASERNAIRMINYANVPEGGYINSVGGDWYDGNWMLGGVRSGTTALDRAQLNILNGIGSSASYLFGADGIARCQEWRSTSDERIKSNIERISNPLSKMRNIKGVTWVLETNGSIGYGFIAQDVEKDFPEAVSETKSSPVTLRDGSILDDVKSVNTSGVAAALHHEAILALMDQIDELKAEIAALKAAK
Physico‐chemical
properties
protein length:785 AA
molecular weight: 82996,44190 Da
isoelectric point:5,21204
aromaticity:0,08662
hydropathy:-0,14650

Domains

Domains [InterPro]
DC_1952
STR
1–317
DC_1952 IPR030392
cd19958
STR
105–189
cd19958 DC_1590
SSF88874
STR
307–480
SSF88874 IPR030392 Coil
YP_009101025.1
1 785
Architecture
STR
STR 1-785
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ECML-117
[NCBI] 		1204521 Uroviricota > Caudoviricetes > Lindbergviridae > Wifcevirus ECML117 >
Host Escherichia coli O157:H7
[NCBI] 		83334 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009101025.1 [NCBI]
Genbank nucleotide accession
NC_025441.1 [NCBI]
CDS location
range 10257 -> 12614
strand -
CDS
ATGCCAAGGCTAATATTCAAAAACAACTTTGAGGTCGCGCTGGCTCAACCAACGACGACTTCAGACACCACAATCACAATTCGCTCAGGGTCGGGCTTTCCGACCTTGGGCGCAAACGAGCGTGTAGTGGCGACAATCGTCGACGCTGCAACAGGCCTCCAATTCGAAATCGTCACAGTAACAGCCGTTGTTGGAAACGTCCTGACCGTGCAGCGTGCACAAGAAGGGACTGCAGCGCGTGCATGGGCGGCTGGCGACATGCTTTCTATTCGAACCACTGCCGCAACTTTGACGGGTACTGTCCGAAACTTTGGAGAGATTCCTAACGGAATAAATCTCAATGCCTTGACTGGTTCATGGTTTGGTCAATATCATCAATCAGCAAATGCTGGTGCATCATCGGCGCTGAACTATCCAGTCTCACAAGCTGGTATTCTTGAAGTTTACAATACTGGCGTCGCAGGAGAAAGCTGCGTCCAAAGATATACGCCTTATTGGATCAACGCCATATACCAAAGGCTATACAATGCTGGCTCATCATCCTGGTCGGATTGGGTGCAAATGTATAGTACGCAAAGCACGATTCCAATTGCAAATGGCGGAACTGGGCAGACCACCATTCAAGGAATGAAGACTGCTTTCGGATTCGGCCCTGTTGCTGATCAGAGCATCGTTCCAACTTCAATGGGCGGCACAGGCTCTGCAGATAATGCTCAGGCGTGGCTAAACATCCGTCCACAAGGATCAACGCCGCTCGCTGGCGACCCTGTAAATGATTATGATGCCGCGACTAAGCGTTGGGTTGAAAACTTAGTAAACACAGGCACCGTTGGCCCAAGTATGAACGGTGTCATGAACTATGGTGTTGGCGATTTCCATCTTCGCAATAGTAGATCATATATTCAGCCATACGAAGTCGTTGCAGACGGGCAATTGCTAAACCGTGCTGACTGGCCTGAACTTTGGGCGTATGCGCAGATGCTTTCACCCATCGCAGATGCCGACTGGCTTGCGGATAAGTTCAAACGTGCAAAATATTCTTCAGGTAACGGCACAACGACATTCCGTGTCCCAGACCTTAACGGTGTCCAGACAGGCTCTGTACGGGCGCTTTACGGGCGCGGTGATGGCGGCAACTCCACTGCGAACGGTCAAATATTTGAATCTGCTGCACCAAACATCACAGGCTCAGCTGCTGGTGTATCGGCAGGCACTTATGCGCAAATCTTTGGCACAGCCGTCCGAGGTGCTTTTTACACAAACAACGATTTGTACCCCCAAGGCGGCGGCGACACCATACCTGTTGGAAGCGGGGCAGTGGAGGGGCGTCTCAATACAATAAATATTGATGCATCCAGATCAAGCCCGATTTATGGAGCGGCAACTGACGAAATCATGGGTCGCAACTTTGTTGGCGTTTGGGTGATTCGTGCATCGGGTGGATTTGTTGCCGCGAATACTTCTTGGAGTGTGATTAACGGCGACGCAGTAAAACCTGCAGCCGGAACGCTTGTCAGAGGCGGTAGTGTAAAATCTGAATATAAGATTGGCACGAACGTTGCGTATCAAGCATTCTTGCAGGCATACGGAAAAATTGATGGATTAACATCTGAACAAGGTGCGGTGATATCTAATGGGGTGCAAGAATGGTCATTCAACCAAGCTGGGACTTTGTACTTCCCAAGCGCAGAGACTCAAATTGGCACACTAAGGCCTGACGGCGCATTACACATTGACGCATACGTAAGGCCCAAGGATGTCGTTGCACAACCGTTGAATTCAGTCGGGGTGGCAGCTTCAGAAAGAAATGCCATCAGGATGATCAACTACGCGAATGTGCCAGAAGGAGGCTATATAAACTCCGTTGGCGGCGACTGGTATGACGGGAATTGGATGCTTGGCGGAGTCAGAAGTGGCACAACAGCATTGGACCGTGCGCAACTTAACATTTTGAATGGCATTGGCAGCAGTGCCTCTTATCTATTTGGTGCTGACGGCATAGCAAGATGCCAGGAATGGCGAAGCACATCTGACGAAAGAATTAAAAGCAACATTGAGCGCATCAGTAATCCGCTCTCCAAGATGAGAAACATCAAAGGGGTCACATGGGTCCTGGAGACAAATGGCTCAATCGGATACGGATTCATCGCGCAGGACGTAGAGAAAGACTTCCCTGAAGCCGTATCAGAAACAAAATCATCACCAGTCACCCTGCGTGATGGGTCAATTCTGGATGACGTAAAGTCAGTAAACACTTCTGGCGTTGCAGCAGCACTCCATCACGAGGCAATTCTTGCATTGATGGATCAGATAGATGAACTAAAGGCAGAAATAGCCGCGCTGAAAGCAGCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
325be3ecc1755f5716cb86a1c57f4ff26d627372e8c78df08271649d907c2502
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7150
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage cocktail significantly reduces contamination of lettuce and beef with Escherichia coli O157:H7, but does not protect against recontamination Carter,C., Parks,A.R., Abuladze,T., Li,M., Senecal,A., Kropinski,A. and Sulakvelidze,A. 2012-07 — GenBank