Protein

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Genbank accession
USS70642.1 [GenBank]
Protein name
tail tubular protein b
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MALISQSIKNLKGGISQQPDILRYSDQGSKQINGFSSEVEGLQKRPPSVHVKRLTDQFGLGQKPYCHIINRDEVERYAVFFTGSNIRVFDLFTGDEKTVNASNGLSYVTSSNPRKDLRMVTVADYTFILNRNVSTAQGTTNTPSGLAPFGHFGLVVIRGGQYGRTYRVKVNGSVEASFETPLGDQVEHAKQIDIAYIIDQLAAGLINRGWAVTKGSGYFYFSKSGTVIINSLEVEDGYNGQLAWGIINDVQKTTQLPVYAPNNYIIRVSGDPTLNQDDYYVKFDASRNVWTECPAPNIKADYNKDTMPHVLIREADGTFTFKQADWTHRAAGDDDTNPYPSFIGNSINDIFFFRNRLGFLSGENVILSGSGNYFNFFPESVAVLTDTDPIDVAVSTNRISILKYAVPFSEELILWSDQAQFVLSSDGGLTPTTVRLDLTTEFEVTEQTRPFGIGRGVYFVSPRAKFSSVRRFYAVQDVTQVKNAEDISAHVPSYVENGVFKMSGSSTENFLTILTEGNEQRVYFYKFLYLQEQLVQQSWSHWDFGVNCRVLCCDMIGAVMHLVIDSPSGVLMEKIEFTQNTKDYPDEPYRLYVDRKIEYTFPEGSYNDDDFKTRVKLKDIYGSTPANGQYVFISLGGVTFTFDPPAGGWQVNDGLIEFDGDLRGTKFFVGEAYTFLYEFSKFLIKTTDTAGGVATEDIGRLQLRRAWVNYDKSGNFRVEVNNQGRTFTYNMTGNRLSTNELILGDESLDTGQFRYAVSGNATQVTVSLISDTPNPLSIIGGGWEGYYVRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88795,17820 Da
isoelectric point:5,15305
aromaticity:0,12469
hydropathy:-0,30466

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
USS70642.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USS70642.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9904
Central domain 149 348 201 0,0926
C-terminal 349 794 445 0,1468
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ICP3
[NCBI] 		979535 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Chatterjeevirus
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USS70642.1 [NCBI]
Genbank nucleotide accession
ON464735 [NCBI]
CDS location
range 23328 -> 25712
strand +
CDS
ATGGCTCTTATCAGTCAAAGTATTAAGAACCTTAAAGGAGGTATCAGTCAACAACCTGATATCTTACGGTATTCAGACCAAGGTTCCAAACAGATTAACGGTTTCTCTTCAGAGGTAGAAGGTCTTCAAAAGAGACCTCCCTCAGTTCACGTAAAGAGATTAACCGACCAGTTTGGCTTAGGGCAAAAGCCTTATTGTCATATCATTAACCGTGATGAAGTAGAGCGTTATGCAGTGTTCTTTACAGGTTCAAACATTCGGGTATTCGATTTGTTTACTGGTGATGAGAAAACTGTGAATGCTTCTAACGGTTTATCTTACGTGACTTCTTCTAACCCTCGTAAAGACCTTCGTATGGTGACTGTTGCTGATTATACGTTCATTCTTAATCGTAACGTATCGACTGCTCAAGGTACAACTAACACTCCAAGTGGACTGGCTCCTTTTGGTCACTTTGGGTTGGTGGTTATCCGTGGTGGTCAATATGGTCGTACCTATCGAGTCAAAGTTAATGGAAGCGTAGAGGCATCTTTTGAGACTCCTTTAGGCGACCAAGTGGAACATGCAAAACAAATAGACATTGCGTATATCATTGACCAGTTAGCGGCAGGTTTAATCAACAGGGGATGGGCTGTAACTAAAGGTTCCGGTTATTTCTATTTCTCAAAGAGTGGTACTGTGATTATCAACTCTCTGGAAGTAGAGGATGGTTACAACGGTCAGTTGGCTTGGGGTATCATTAACGATGTTCAGAAGACAACTCAGTTACCTGTCTATGCGCCTAACAACTACATTATCCGAGTGTCTGGAGACCCTACGTTGAATCAGGACGATTACTACGTTAAGTTCGATGCTTCTCGTAACGTCTGGACTGAATGTCCTGCTCCTAATATCAAAGCGGATTATAACAAAGATACCATGCCTCATGTGTTGATTCGTGAAGCTGACGGTACGTTTACCTTCAAGCAAGCTGATTGGACTCATAGAGCTGCTGGTGATGATGATACGAACCCGTATCCATCCTTCATTGGGAATAGTATTAACGATATCTTCTTCTTCCGTAACCGTTTAGGTTTCCTGAGTGGAGAGAACGTAATCCTTTCAGGTTCCGGTAATTACTTCAACTTCTTCCCTGAGTCAGTCGCGGTGTTAACCGATACAGACCCCATTGACGTAGCTGTAAGTACAAACCGAATCTCAATCCTGAAGTATGCTGTGCCATTCTCAGAAGAGTTAATTCTGTGGTCTGACCAAGCTCAGTTCGTATTAAGTTCTGATGGTGGTCTTACACCAACAACTGTACGATTAGACTTGACGACTGAATTTGAAGTGACTGAACAGACTCGTCCTTTCGGTATTGGACGTGGTGTGTACTTCGTGTCACCTCGTGCTAAGTTCAGTTCTGTACGTCGATTTTATGCGGTTCAGGACGTTACCCAAGTGAAGAACGCAGAGGATATTTCAGCACACGTTCCTTCTTATGTTGAGAATGGTGTATTCAAAATGTCCGGTAGTTCCACTGAGAACTTCTTAACGATTCTGACTGAAGGTAATGAACAACGAGTTTACTTCTATAAGTTCCTCTATCTGCAAGAACAGTTAGTTCAACAATCATGGTCTCATTGGGACTTTGGTGTGAACTGTCGAGTTCTCTGCTGTGATATGATTGGTGCTGTGATGCATCTCGTTATTGACAGTCCGTCAGGTGTTCTTATGGAGAAGATTGAGTTCACTCAGAATACGAAAGACTATCCAGACGAACCTTATCGTCTGTACGTTGACCGTAAGATTGAATATACGTTCCCTGAAGGCTCATACAATGATGATGATTTTAAGACTCGTGTGAAACTCAAGGATATCTATGGCTCCACTCCTGCAAATGGACAATACGTGTTTATCTCACTTGGTGGGGTTACTTTCACGTTCGACCCTCCTGCTGGTGGTTGGCAAGTCAATGATGGATTGATTGAGTTTGATGGCGATTTACGTGGTACTAAGTTCTTCGTTGGGGAAGCTTACACGTTCCTCTATGAGTTCTCGAAGTTCCTCATTAAGACAACCGATACGGCTGGTGGTGTAGCTACTGAAGATATCGGTAGGTTGCAACTTCGTCGTGCTTGGGTGAACTACGATAAGTCAGGTAACTTCCGAGTCGAAGTGAACAACCAAGGTCGAACCTTCACATATAACATGACAGGGAACCGTTTGTCTACCAATGAGCTTATCCTTGGTGATGAGTCTCTGGATACAGGCCAGTTCCGTTATGCGGTGTCTGGTAATGCAACTCAAGTAACTGTAAGTCTCATCTCAGATACTCCTAACCCATTATCCATCATCGGTGGAGGCTGGGAGGGATACTATGTGAGACGTTCATCTGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ddfc2b0bca16caaff3bef5e38771d5b7909585562021c47cc1435186692d88a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3032
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Vibrio cholerae Seventh Pandemic islands act in tandem to defend against a circulating phage O'Hara,B.J., Alam,M. and Ng,W.-L. 2022 36026491 GenBank