Protein

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Genbank accession
WDY79222.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MARPGVSDNGPSDGGLLMAKIERKQGDTITVSETFERPGSRSSQALDLSDAQSVQIYVDHPSSGDLVVKDTAEITDAANGMVEYTLGGTQTARQGQHRLEFVAEFAGGETFSYPQTGFVSLKVTDPAARELPIEELADGDASVTELAADAIRANTASAVDVMDALDLNNNPITSLPVPSNPADAARKDGLDTVASDLSSVESDLTSQVTRFDELAIDRGPISSRPTSGDYDDQMYYAVDQRILWRWDAGSSDWNAAGGLGVSSQRLPVTSYLAAVDVSTLAAGDVNLSGTLTGDAVDVSTLAAGDVNLSGTLTGPKLSAEEIDSAQSVTISDDETVTYGRDHVHPDRGIEPNSVAIGVGARAPDSTGDPGWFNDTANSVAIGYQALRDNTGANSNGVGYRALANNTGFGSNGVGYEALRDNTGFGSNGVGYEALRDNTGDKSNGVGREALRDNTGDRSNGVGYYALRDNTGDRSNGVGYRALRYNTGDRSNGVGYYALRDNTGFGSNGVGYYALRDNTGDRSNGVGYRALRHNTGDRSNGVGYRALEGDGLSNPSDMGSNVNAFGFEAGRNNTGEGVILIGQQAGINNSEDDVLLITDRNGETRLKMDLTNGNMEIGGSLSENATLN
Physico‐chemical
properties
protein length:627 AA
molecular weight: 65656,06190 Da
isoelectric point:4,34980
aromaticity:0,06061
hydropathy:-0,49777

Domains

Domains [InterPro]
DC_2098
STR
26–444
DC_2098 DC_1933
DC_1988
STR
425–523
DC_1988
WDY79222.1
1 627
Architecture
STR
STR 26-625 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDY79222.1
1 627
Domain Start End Length (AA) Confidence
N-terminal 1 319 319 0,9844
Central domain 320 581 263 0,9318
C-terminal 582 627 45 0,7861
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-319
Central
320-581
C-terminal
582-627

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum tailed virus
[NCBI] 		2992037 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum lacusprofundi
[NCBI] 		2247 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDY79222.1 [NCBI]
Genbank nucleotide accession
OP630576.1 [NCBI]
CDS location
range 24663 -> 26546
strand -
CDS
ATGGCCCGCCCAGGCGTGAGCGACAACGGGCCATCCGATGGAGGTTTACTTATGGCGAAAATCGAGAGAAAACAAGGAGACACGATCACGGTCAGTGAGACATTCGAGCGCCCCGGCAGCCGGTCGTCGCAGGCGCTTGATCTCTCAGACGCACAGTCGGTACAAATATACGTCGACCACCCAAGCAGCGGCGATCTCGTGGTCAAAGACACGGCCGAGATCACCGACGCCGCAAACGGGATGGTTGAGTACACGCTGGGCGGCACGCAAACCGCGCGCCAAGGACAACATCGCCTTGAGTTCGTCGCGGAGTTCGCCGGCGGGGAGACCTTCAGCTACCCCCAGACAGGCTTTGTCTCGCTGAAGGTGACCGACCCCGCGGCCCGCGAGTTGCCGATCGAGGAGTTGGCCGATGGCGACGCCAGCGTGACGGAGTTGGCCGCCGACGCGATCCGAGCCAACACCGCCTCGGCGGTGGATGTCATGGACGCGCTCGATCTCAACAACAACCCGATCACCAGCCTGCCGGTTCCCTCCAACCCCGCCGACGCCGCGCGAAAAGACGGTCTCGACACAGTTGCGTCTGATCTATCGTCGGTCGAATCTGACCTAACATCACAAGTGACCCGCTTCGACGAACTGGCGATTGATCGCGGCCCGATCTCGTCGCGGCCGACCAGCGGGGACTACGACGACCAGATGTACTACGCGGTGGATCAACGCATCCTGTGGCGGTGGGATGCGGGATCATCCGACTGGAACGCCGCGGGCGGCCTCGGTGTGTCGTCGCAGCGCCTCCCGGTAACGTCCTACCTCGCCGCCGTCGACGTCAGCACACTGGCGGCGGGGGACGTCAACCTGTCCGGCACGCTGACGGGGGACGCCGTCGACGTCAGCACACTGGCGGCGGGGGACGTCAACCTGTCCGGCACGCTGACCGGGCCGAAGCTAAGTGCAGAGGAAATAGACAGCGCTCAATCAGTCACGATCTCCGATGACGAGACAGTGACCTATGGACGCGATCACGTCCATCCTGATCGAGGGATCGAACCAAACTCGGTTGCTATCGGCGTCGGAGCGCGTGCCCCTGACAGCACGGGCGATCCTGGCTGGTTTAACGATACAGCAAATTCTGTGGCAATTGGGTATCAGGCGCTTCGAGACAACACGGGGGCCAACTCCAACGGCGTCGGGTATCGGGCGCTCGCGAACAACACGGGGTTCGGCTCCAACGGCGTCGGGTATGAGGCGCTTCGAGACAACACGGGGTTCGGCTCCAACGGCGTCGGGTATGAGGCGCTTCGAGACAACACGGGGGACAAATCCAACGGCGTCGGGCGTGAGGCGCTTCGAGACAACACGGGGGACAGATCCAACGGCGTCGGGTATTACGCGCTTCGAGACAACACGGGGGACAGATCCAACGGCGTCGGGTATCGGGCGCTTCGATACAACACGGGGGACAGATCCAACGGCGTCGGGTATTACGCGCTTCGAGACAACACGGGGTTCGGCTCCAACGGCGTCGGGTATTACGCGCTTCGAGACAACACGGGGGACAGATCCAACGGCGTCGGGTATCGGGCGCTTCGACACAACACGGGGGACAGATCCAACGGCGTCGGGTATCGGGCGCTTGAGGGGGACGGCCTATCCAACCCATCGGATATGGGGTCAAACGTCAATGCGTTCGGATTCGAAGCGGGTCGGAACAACACCGGTGAGGGGGTAATCCTCATCGGGCAGCAAGCTGGCATCAACAACAGCGAAGATGACGTGTTGTTGATAACTGACCGCAACGGAGAGACAAGACTCAAAATGGACCTGACGAACGGGAACATGGAAATCGGCGGATCGCTGTCTGAAAACGCGACCCTCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bade9977f73b9ee133d2808d02f9b986dd5ac335ff3e9a53b3b1fe7566c0888b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7412
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In depth characterization of an archaeal virus-host system reveals numerous virus exclusion mechanisms Mercier,C., Thies,D., Zhong,L., Raftery,M.J., Cavicchioli,R. and Erdmann,S. 2022 — GenBank