Protein

View in Explore
Genbank accession
XLM30722.1 [GenBank]
Protein name
head-binding domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MELKTYFAQDRNGRLIPSARVSIFLTGTSTLATGLKTVSGDNLANPFNADADGKIQFYAPDGIYDMQVSLGSVSGVKVTFQCLDVQQQLTDANSAADRAEAAAEDAEQAIAGVQLDISSLPEIWRRSLTLSGFNYVGTFQDGDFTVSNQYQAVWDKTTKTCYYRTSGFPVTVAPGTTPDGSWQVVAKHFTCPNVTAMRAANAAVGDYIEWNGYYSSGDGGGNSGYVSAGPLTPDNGSVFLLNNGLYVQAIFKRAIDPLKFGVSGGRTSAQNKVCFDAMVTYSLNNKYPIRANRFMDYQCDPVIINGALADFFHFSCPRGMLTHRCPSTTSPAFILQGSRTTALDMNTFQYCTIDGPRIVSSYCGIYTRWTENLTLVNLIFGGSGVAIMQSANGNLETDIKSRIEKIIFSGCKSAYKGAIPDGNGDEGRVADSIFKDWIALNCGLADGDWVFQFGYLDGCNIDHVETYTDANNLVPMNGMLLPKPNIVNIRNCNIFETMGIGVQISSPRNTSMDETNTIWGVGEAANNPALLITKYGDIESYGSQFRPRINNNYGPALSVMNVGNIDFTGISESGNCIGSSTLSGMLFQGSPGNIMHRSKHDSLGASWIRLDNSDVEVLSPKVSKYSSDAVRSNGGKMFILPGNKQISASSAIIAKTYDDDINYNAASGGANVQLPNAAMCPGKVIRVSKTDSGSNGVAVQPLSGTGQTINGATLRSLTAQYQTETYKSDGTNWYVVSRFPA
Physico‐chemical
properties
protein length:741 AA
molecular weight: 79705,38420 Da
isoelectric point:5,35943
aromaticity:0,09582
hydropathy:-0,18988

Domains

Domains [InterPro]
DC_1436
ATT
1–162
DC_1436 DC_0954
Coil
Unmapped
89–116
Coil
XLM30722.1
1 741
Architecture
ATT
ATT
ATT 1-162 | ATT 496-741
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM30722.1
1 741
Domain Start End Length (AA) Confidence
N-terminal 1 270 270 0,9957
Central domain 271 638 369 0,9907
C-terminal 639 741 102 0,9823
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-270
Central
271-638
C-terminal
639-741

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Alux-21
[NCBI] 		3383217 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM30722.1 [NCBI]
Genbank nucleotide accession
PQ589898 [NCBI]
CDS location
range 26030 -> 28255
strand +
CDS
GTGGAATTAAAAACGTATTTCGCGCAGGACAGAAACGGCAGACTTATCCCGTCTGCTAGAGTATCAATCTTTCTTACTGGTACATCAACACTTGCAACTGGACTAAAGACAGTTAGTGGCGATAACCTGGCCAACCCGTTCAATGCTGACGCAGACGGTAAAATCCAGTTCTATGCGCCAGATGGCATTTATGACATGCAAGTTTCGCTTGGTAGCGTTTCTGGCGTGAAAGTAACATTTCAGTGCCTTGATGTTCAGCAGCAATTGACCGATGCCAATAGTGCAGCAGACCGGGCAGAAGCAGCCGCAGAAGATGCGGAACAGGCCATTGCTGGTGTTCAGCTTGACATTTCCAGCCTGCCAGAAATCTGGCGCAGAAGCCTGACGCTTTCAGGTTTTAATTATGTTGGCACGTTCCAGGATGGCGACTTCACTGTTTCCAACCAATACCAGGCCGTATGGGATAAAACCACAAAGACTTGCTATTACAGAACGTCTGGTTTTCCTGTCACTGTTGCGCCTGGCACAACGCCAGATGGTTCATGGCAGGTTGTAGCCAAACACTTCACCTGCCCGAACGTCACAGCGATGCGCGCCGCAAATGCTGCGGTTGGCGACTACATTGAATGGAACGGCTATTATTCATCTGGCGACGGTGGCGGAAACTCTGGTTATGTGTCTGCAGGTCCACTGACGCCGGATAATGGCAGCGTGTTCCTGCTGAATAACGGTCTATATGTTCAGGCTATTTTCAAACGCGCAATTGATCCGCTCAAATTTGGCGTTTCAGGTGGTCGCACTTCCGCGCAGAACAAAGTTTGCTTTGATGCAATGGTCACTTATTCGCTGAACAACAAATACCCGATAAGGGCTAACCGGTTCATGGATTACCAGTGTGACCCTGTAATCATCAACGGCGCACTTGCTGACTTTTTCCATTTTTCATGCCCGCGAGGAATGCTTACCCACAGATGTCCTAGCACTACATCACCGGCATTTATTTTGCAGGGTTCCAGAACAACCGCGCTTGATATGAATACATTCCAGTATTGCACAATCGATGGACCTCGAATCGTCAGCAGTTATTGTGGAATATACACTCGCTGGACTGAGAACCTTACCCTGGTGAATCTGATTTTTGGCGGATCAGGTGTTGCCATCATGCAATCAGCGAATGGAAATCTGGAAACAGATATCAAATCAAGAATTGAAAAAATCATATTTTCAGGATGCAAGAGTGCTTATAAGGGCGCTATTCCAGACGGTAACGGCGATGAAGGCCGCGTGGCTGACTCAATTTTTAAAGATTGGATAGCATTGAACTGCGGGCTTGCTGATGGCGATTGGGTGTTCCAGTTCGGATATCTTGACGGCTGCAATATCGATCATGTGGAAACGTACACAGATGCGAACAACCTGGTCCCAATGAATGGGATGCTATTGCCAAAGCCAAATATTGTTAATATTAGGAACTGCAACATCTTTGAAACAATGGGTATTGGCGTTCAAATTTCATCGCCACGAAATACCAGCATGGACGAAACAAACACCATTTGGGGTGTTGGTGAAGCAGCAAACAATCCTGCCCTTCTCATTACAAAATACGGAGACATTGAATCGTATGGTAGCCAGTTCAGGCCGCGCATAAATAATAATTACGGTCCTGCGTTATCAGTTATGAATGTTGGTAATATCGACTTCACCGGTATCAGTGAGTCTGGAAACTGCATTGGTTCATCAACTCTGTCAGGGATGCTGTTCCAGGGTTCGCCTGGTAATATTATGCACCGTTCAAAACATGACAGTTTGGGCGCATCCTGGATCAGGCTGGACAACTCTGACGTTGAAGTATTATCACCGAAGGTCAGCAAGTATTCGTCTGACGCTGTACGATCTAACGGCGGAAAGATGTTTATTCTTCCAGGGAACAAACAAATATCTGCTAGTTCCGCTATCATTGCGAAAACCTATGATGATGACATAAACTACAACGCGGCAAGCGGTGGTGCAAACGTTCAGTTGCCTAACGCTGCGATGTGCCCTGGTAAAGTAATCCGCGTTTCTAAAACAGATTCTGGGTCAAACGGTGTGGCTGTTCAGCCGTTAAGCGGGACAGGGCAGACGATAAACGGTGCCACATTGCGATCACTTACAGCACAGTATCAGACAGAAACATACAAATCTGATGGAACAAATTGGTATGTTGTTTCCAGATTCCCGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83398f3a1d7bf223c39290c5857de9515fcb2c9cf2a7f469349bd03259d085ce
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8686
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a bacteriophage as a biological control agent against Escherichia coli in compost and agricultural irrigation water Amarillas,L., Estrada,M., Lightbourn,L., Leon,R. and Lopez-Avenano,E. 2024-12-16 — GenBank