Protein

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Genbank accession
QOC54721.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MENWLVAHAVDNAWQRPNLDRALIIEPYRITPKTGATGFVRNGPVSVSLPDAGWWHAYVVDKLHMNWGNLNIPPNRWKRVSACVNAFSTFMQLYNENGKTFPVTNAFVMRRDTGEILLAIPQTDRYSWLDTDDIYWRIFPGYTGTVVAKQVHPTFVEFFETPNANKIKDAIDRYNSLVGLNNGYVSFWVNGSLIINPTPADISTWDDVEIMVDGRGIRVVDFRCGDLPTFQSTLDGKRKYLLHFPKTADMVWIFNNDVEIQILNGREGRYYHRHRHLAIRQVTFNDISIPTERLSQLRNAFSKPITDLDDVIIRVVIREDYLAMAPLFNASHIHDLYKMPDSDIIAAMVGANATVPEWTAKVLENAAFNKVAAAKMSNITRDLATDAYGYNAVTRYAADTPQKLRLDNGKWTATLPDLLASRSVVYEYDSTGKMLGCYPNRNAAVYTAKNATARYIEGIAGDVDTAMNITDNAPDFTIAEGENVALWVRKVVSGVGTNEYTEAVEGTDYKREGNAIRWNVDRTRRWPTVVRDDRHLFFSQTVNVKEGQLRIPILGRSNSEPIRTLWTPMETVEVWLNKRPLVFGIDYVVIWPEIVIVCKVWASDTDENVVDIRARGVTGKLHVPKTGFVSSGLLSNNSHFDVRDDKVIRIVAGGRILTRNEVVFREDNTVGTDVVPDGFPFSVDDPTVPLRTLITGDTYALRDVSRDIDARTEDYLSAWYPTPPPVNPVPLKSWYHLYSPLLNKVLWDYKQGYLHLVEDDPEYRISTSQLDIVMEGYLDLLNFDPAFIGYDKAFVRVHPHSQYQVVEVDELGFAFMDRVNQRYLKGEVQLNQYLKIKGSKA
Physico‐chemical
properties
protein length:841 AA
molecular weight: 95658,30710 Da
isoelectric point:5,85876
aromaticity:0,10939
hydropathy:-0,27729

Domains

Domains [InterPro]
IPR055617
STR
2–837
IPR055617
QOC54721.1
1 841
Architecture
STR
STR 2-837 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC54721.1
1 841
Domain Start End Length (AA) Confidence
N-terminal 1 203 203 0,6294
Central domain 204 830 628 0,3420
C-terminal 831 841 10 0,5617
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-203
Central
204-830
C-terminal
831-841

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage pSal-SNUABM-04
[NCBI] 		2759192 No lineage information
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC54721.1 [NCBI]
Genbank nucleotide accession
MT710307 [NCBI]
CDS location
range 227362 -> 229887
strand +
CDS
ATGGAGAACTGGCTGGTCGCCCACGCGGTTGACAACGCTTGGCAGCGTCCGAACCTTGATCGGGCACTGATTATTGAACCGTATCGTATCACGCCAAAAACCGGCGCGACCGGCTTTGTCCGTAACGGGCCTGTGTCTGTATCTTTACCCGACGCAGGTTGGTGGCACGCATACGTGGTGGATAAACTCCACATGAACTGGGGGAACCTCAACATTCCCCCGAACCGTTGGAAACGGGTATCTGCCTGCGTGAATGCGTTCAGTACCTTCATGCAGCTGTACAACGAAAACGGGAAAACCTTCCCGGTGACGAACGCGTTTGTCATGCGTCGTGATACCGGAGAAATCCTGTTAGCGATTCCACAGACCGACCGTTACAGCTGGCTGGATACCGACGACATCTACTGGCGTATCTTCCCCGGCTACACTGGCACGGTGGTGGCGAAACAAGTGCACCCGACGTTTGTCGAGTTCTTTGAAACGCCCAATGCCAACAAAATCAAAGATGCCATCGACCGCTACAATTCACTGGTCGGCCTGAACAACGGCTATGTGAGTTTCTGGGTCAACGGCTCGCTGATTATCAACCCGACTCCGGCGGATATCTCGACGTGGGACGATGTTGAGATTATGGTGGATGGGCGTGGGATTCGTGTGGTGGATTTCCGCTGTGGGGATTTACCGACCTTCCAGTCGACACTGGATGGAAAACGTAAGTACCTGCTTCACTTCCCGAAAACTGCGGACATGGTGTGGATTTTCAACAACGACGTTGAGATTCAAATCCTGAACGGGCGCGAGGGACGTTACTACCACCGTCATCGTCATCTGGCCATTCGTCAGGTCACGTTCAACGACATCAGCATTCCGACGGAACGACTGAGCCAATTGCGTAACGCTTTCAGCAAACCGATTACCGACTTGGATGACGTGATTATCCGTGTGGTTATCCGTGAAGACTACCTTGCGATGGCTCCGCTGTTCAATGCCAGTCATATCCACGACCTGTATAAGATGCCGGACAGCGACATCATTGCAGCGATGGTTGGGGCTAACGCTACTGTGCCTGAGTGGACGGCGAAGGTGTTGGAAAATGCCGCCTTTAATAAAGTGGCTGCGGCGAAGATGTCGAACATCACTCGCGATCTGGCAACGGACGCTTACGGGTATAATGCGGTAACGCGTTACGCGGCTGACACACCACAGAAGCTGAGACTGGATAACGGGAAGTGGACAGCAACGCTGCCTGACCTGTTGGCCTCACGGTCAGTGGTTTATGAATACGACTCGACAGGGAAAATGCTCGGTTGTTACCCGAACCGGAACGCGGCAGTCTACACGGCGAAGAACGCTACCGCCCGCTACATCGAGGGGATTGCAGGTGATGTTGATACGGCGATGAACATCACGGACAACGCACCCGATTTCACCATCGCGGAAGGGGAAAACGTTGCGCTGTGGGTTCGTAAGGTGGTCAGTGGTGTCGGCACCAATGAATACACCGAGGCGGTAGAAGGGACGGACTACAAGCGGGAAGGTAACGCCATCCGGTGGAACGTTGACCGCACACGCCGTTGGCCAACTGTCGTGCGTGACGACCGTCACTTGTTCTTCAGTCAGACCGTGAACGTCAAAGAAGGCCAATTGCGCATCCCGATTCTGGGGCGTTCAAACAGCGAACCGATTCGTACGTTGTGGACACCGATGGAAACCGTGGAGGTTTGGTTAAACAAACGGCCGCTGGTCTTTGGGATTGACTACGTCGTTATCTGGCCAGAGATTGTGATTGTTTGCAAAGTCTGGGCCAGTGATACCGACGAGAACGTGGTGGATATTCGTGCCCGTGGTGTAACCGGTAAACTGCATGTGCCGAAGACCGGGTTTGTTTCCAGCGGGTTACTGTCTAACAACAGTCACTTCGACGTGCGTGACGATAAGGTCATTCGTATCGTTGCCGGGGGCCGTATCCTGACCCGTAACGAAGTGGTCTTCCGTGAAGACAACACCGTGGGTACCGATGTCGTGCCGGACGGGTTCCCCTTCTCAGTGGATGACCCAACAGTGCCACTGCGGACACTCATCACCGGGGACACGTATGCGTTACGCGATGTATCACGCGACATCGATGCGCGTACCGAGGATTATCTGTCGGCTTGGTATCCAACCCCGCCACCGGTCAATCCGGTACCGTTGAAAAGCTGGTATCATCTCTACAGCCCACTGTTGAACAAAGTGCTGTGGGATTACAAGCAAGGGTACCTCCATTTGGTAGAAGACGATCCGGAATACCGGATTTCGACTTCACAGCTGGACATCGTCATGGAGGGTTATCTTGACCTGCTGAACTTTGACCCGGCATTCATTGGCTACGATAAAGCCTTTGTGCGTGTGCACCCGCATTCGCAATACCAGGTTGTAGAGGTTGATGAATTGGGCTTTGCTTTCATGGACCGTGTGAATCAACGGTATCTGAAAGGTGAGGTGCAACTTAACCAGTATCTGAAAATCAAAGGTTCTAAAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
55458cabf16e901b8a171aa9d08d602dcceac13606eb44255ae34d47f7711db2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2995
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of giant Salmonella phage, pSal-SNUABM-04 Kwon,J., Park,S.C. and Kim,S.G. 2020-12-25 — GenBank