Protein

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Genbank accession
YP_009784713.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSNLSFVRHVGDGSTTQFALAVAGENIGYFRTSDIHGYVDDVEVAITINAASPHLVIINPAPKKGADVLLRREMPLDKPYANFERGNNFGHRQVNNTFVQQLYLQQEMLDGFLPKGYYLKQELDAGLHKIKNMAQATSKGDAVEHNQWYDKNVVQDDRLLSLEQSLTAGNLVYRRVVFTATEGQTEFNPNATFGGILNLYINGVNQIAGEAYESIDGRLIKTVPLDEGDRVVAIIGQEPQFVEPEQTDFRYVRYPFFATGGETTYVLPADAKQVMSLYINGIHQTYQGAFDFDASTRTVNFAEALEGGDEVVVYAGSESVVEGDASNLPVTSLDGSLTSTLRSWVQNFVDFGDNRVIATGSTTSRSLSDRFADVVRVADFELGATSDYEAIKRAHDYANIVQRPVEYERRTYTIDRIPESIRVLSDVNFNNATLRFVEGAKGKISLYSIDTLLPERVMPASTVSVIQSSLYEDAVNIPSLAATSYTNSYLLIENDELLAHRQGYTTDFYKTDPVILLENGNMTAPLLCDHRTGNLTITEKPLESTWLTFGKLTVKLDYTTDVDGAQLVVTRRHSTLFHNIRFENIGTELANPTSLIAALEVAYTMFYNVDGDQGGVDSGAGYMFSYQKCIDTHFDKCGAGGGWGVTNSNWQKNTIITLCDLNRFDAHFGIGDVTISDSSFYGYGAQLAFGRGNFTCNRVTFNQTEGSNINGFRALQFRADTGLGYKGKINMNDCVLNVMYTFDEYRIPIVYVPAFQNVDANPTVDWYLPDIHISNLRANYVSRGTYVHEVKVSAFVMADTYDVPNKIHLPDIIEVDGMSSNYKGQLLGLNGCYFVGTNLDNVCFETKTCNVYLRNIHNDITHIDKDNLDASFGSYAYDVSLFDFGGTTNNIQNSNVRFVIDAERCTGSIYANTATADVTFRYGELLSIWTARNFENLIPAKVSFSKVWARTKSSDTEYYLADSFTRLLVENCEIIATSFNGVTATKFDPLTRQRLQRCYISADSSLDQLGVDALWNTIETVTDMYKKPTT
Physico‐chemical
properties
protein length:1030 AA
molecular weight: 114741,82480 Da
isoelectric point:4,87658
aromaticity:0,11068
hydropathy:-0,23049

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784713.1
1 1030
Domain Start End Length (AA) Confidence
N-terminal 1 385 385 0,9959
Central domain 386 1019 635 0,9835
C-terminal 1020 1030 10 0,5391
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-385
Central
386-1019
C-terminal
1020-1030

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vc1
[NCBI] 		1480731 Uroviricota > Caudoviricetes > Drexlerviridae > Jhansiroadvirus gwaliVC1 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784713.1 [NCBI]
Genbank nucleotide accession
NC_047746.1 [NCBI]
CDS location
range 15350 -> 18442
strand +
CDS
ATGAGTAACCTATCATTCGTTCGGCATGTCGGTGACGGAAGCACTACGCAGTTCGCACTGGCAGTTGCTGGAGAGAATATAGGTTACTTCCGCACTTCTGATATTCACGGATATGTAGATGATGTGGAAGTAGCCATTACTATCAATGCTGCTTCACCTCACTTAGTTATTATCAACCCAGCACCTAAGAAGGGTGCTGATGTTTTACTAAGACGAGAGATGCCGCTTGATAAACCTTACGCTAACTTCGAGCGTGGTAACAACTTTGGTCATCGACAGGTGAACAACACGTTCGTACAACAACTGTACTTGCAACAAGAGATGCTTGATGGCTTCCTGCCTAAAGGTTACTACTTGAAGCAAGAGCTTGATGCTGGTCTTCACAAGATTAAGAACATGGCACAAGCCACTAGTAAAGGGGATGCTGTAGAGCACAATCAGTGGTATGATAAGAACGTTGTACAAGATGACAGGCTTTTAAGTCTTGAGCAATCTCTTACTGCTGGTAACTTAGTGTATCGTCGTGTAGTCTTCACAGCTACTGAAGGGCAGACTGAGTTTAACCCTAATGCTACGTTCGGTGGCATCTTGAATCTATATATCAATGGTGTTAACCAGATTGCAGGTGAGGCGTACGAGTCAATTGATGGTCGTTTGATTAAGACTGTGCCACTTGATGAGGGTGACAGAGTTGTTGCTATAATTGGACAAGAACCTCAGTTCGTAGAGCCAGAGCAGACGGACTTCCGTTATGTTCGCTATCCGTTCTTTGCAACTGGTGGGGAAACAACTTACGTACTCCCAGCAGATGCTAAGCAGGTTATGTCCTTATACATCAACGGTATTCACCAAACGTATCAAGGTGCGTTTGACTTTGATGCTAGTACACGGACAGTAAACTTTGCAGAAGCTCTAGAAGGTGGTGATGAAGTTGTCGTGTATGCAGGTTCAGAGTCAGTGGTTGAGGGAGATGCAAGTAATTTACCAGTCACATCTCTAGATGGTAGTTTGACTAGTACACTTCGTAGTTGGGTGCAGAATTTTGTTGATTTCGGTGATAACAGAGTAATAGCCACAGGGAGTACAACCTCACGTTCTCTCTCTGATAGATTTGCAGATGTAGTACGTGTTGCTGATTTCGAACTAGGGGCGACAAGTGACTATGAAGCAATCAAACGAGCGCACGACTATGCAAACATAGTGCAACGACCTGTAGAATACGAAAGAAGGACGTATACTATTGATAGGATACCTGAAAGTATCCGAGTACTATCCGACGTAAACTTCAACAACGCAACCCTACGGTTCGTTGAGGGTGCAAAAGGTAAGATAAGCTTATATAGTATAGATACACTCCTACCAGAGAGGGTGATGCCTGCTTCTACAGTGTCAGTCATTCAAAGCTCATTGTATGAAGACGCGGTAAATATCCCAAGCCTAGCTGCAACTTCTTATACAAACAGCTACTTACTAATAGAGAACGATGAACTGCTGGCACATCGTCAAGGTTATACTACAGACTTTTACAAAACAGACCCTGTAATACTACTTGAGAATGGAAACATGACAGCACCGTTGTTGTGTGACCATCGAACAGGAAACCTGACAATTACCGAAAAACCATTAGAAAGTACATGGCTTACGTTTGGTAAACTGACAGTTAAACTTGACTACACTACAGATGTTGATGGTGCTCAGTTAGTGGTGACACGTAGACACTCTACTCTTTTCCATAACATTCGTTTCGAGAATATAGGAACAGAGCTAGCTAACCCTACCTCACTGATAGCTGCACTAGAGGTAGCTTACACTATGTTCTATAACGTAGATGGCGACCAAGGCGGTGTAGATAGCGGTGCAGGGTACATGTTCTCTTATCAAAAATGTATAGACACTCACTTTGATAAATGTGGTGCTGGTGGAGGTTGGGGAGTAACTAACAGTAACTGGCAGAAGAACACTATAATAACATTGTGTGACCTAAACAGATTTGATGCACACTTTGGAATAGGCGATGTAACAATCTCAGATTCCTCTTTTTATGGGTACGGTGCCCAACTTGCATTTGGTCGAGGTAACTTCACTTGTAACAGAGTGACGTTTAACCAAACTGAAGGCTCTAACATCAATGGATTTAGGGCGTTACAGTTCCGAGCAGATACGGGACTGGGCTATAAAGGTAAGATTAATATGAATGACTGTGTACTAAACGTAATGTACACATTTGATGAATACCGTATACCTATTGTGTATGTACCTGCCTTCCAAAACGTAGATGCAAATCCTACAGTTGATTGGTACCTTCCTGATATACATATTAGTAACCTAAGAGCAAATTATGTATCAAGGGGAACTTATGTACATGAAGTTAAAGTATCTGCATTTGTCATGGCTGATACTTATGATGTACCTAATAAGATTCACCTACCAGACATAATTGAGGTAGATGGGATGTCTAGTAACTATAAGGGACAACTTCTGGGTTTAAATGGGTGCTACTTCGTAGGTACTAACCTAGACAACGTTTGTTTCGAAACAAAGACATGCAATGTCTACCTTCGCAATATTCATAATGATATTACCCACATAGATAAAGATAACCTTGACGCTAGTTTCGGGTCTTACGCATATGATGTAAGCCTCTTTGACTTTGGTGGTACAACAAATAACATACAGAACAGTAATGTTAGGTTTGTTATTGATGCGGAGAGATGCACAGGGTCTATCTACGCTAACACAGCCACAGCAGACGTTACGTTCCGCTATGGCGAATTGCTTAGCATTTGGACTGCACGTAACTTCGAGAACTTAATACCAGCAAAAGTTAGCTTTAGCAAGGTATGGGCAAGAACCAAAAGCTCTGACACTGAGTATTACCTAGCAGATAGCTTTACTCGCCTACTAGTAGAGAACTGTGAGATTATAGCAACTTCATTCAACGGAGTAACTGCGACTAAGTTTGACCCATTGACTCGTCAGAGACTACAACGGTGCTATATCTCTGCGGATTCATCACTAGACCAACTAGGGGTAGATGCACTATGGAATACAATTGAGACTGTTACAGACATGTATAAGAAACCAACAACTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
6a6bfe57c54ac181ebbaf4e0819caa6880908ab10e504279a5e47f4c219f3991
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7039
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of the phage of Vibrio sp. which is highly homologous to Vibro cyclitrophicus was sequenced and analyzed Li,Z., Xu,Y. and Zhang,J. 2018-01-16 — GenBank