Protein

View in Explore
Genbank accession
YP_009021355.1 [GenBank]
Protein name
structural protein with Ig domain
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,75
Protein sequence
MPTITVLVAPEVVRNKPETERNHVVTGVAKGWQKTSLNQDPDEILTECKGLDALLTKSNLQADGVTKVDPTKPVGFQVSYEIHDPTAVLTTGLTITPATVSGEIGQIVELLATVAPVNATYQGVNWYSGDLTKAIHIGGGKFKLLQSGSVTVYGVTVEGNHTDSTVITVAGLLSLTTDLAASQDVADGADATFTIVAAGGTAPYSYVWYYSDTPGGEGVVIDAGVNPTAATASLVNHAVTAASEGEYWCVVEDADGHSVTSARCELAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27903,86950 Da
isoelectric point:4,48064
aromaticity:0,05948
hydropathy:0,11041

Domains

Domains [InterPro]
DC_0078
STR
1–195
DC_0078
G3DSA:2.60.40.1080
STR
86–170
G3DSA:2.60.40.1080 IPR013783
DC_2066
RBD
166–269
DC_2066
IPR036179
RBD
181–268
IPR036179
YP_009021355.1
1 269
Architecture
STR
STR 1-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB-SalM-SJ2
[NCBI] 		1458849 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009021355.1 [NCBI]
Genbank nucleotide accession
NC_023856 [NCBI]
CDS location
range 71452 -> 72261
strand -
CDS
ATGCCAACAATCACAGTATTAGTCGCGCCGGAAGTTGTCCGCAACAAACCGGAAACCGAACGCAATCATGTCGTGACGGGTGTTGCAAAGGGTTGGCAAAAAACCAGCCTAAATCAAGATCCTGATGAGATCCTGACCGAATGTAAAGGTCTTGATGCGTTGCTGACCAAAAGTAATCTGCAAGCGGACGGTGTCACCAAAGTTGATCCGACCAAGCCAGTAGGTTTCCAGGTTTCTTATGAAATCCATGATCCGACTGCTGTTCTTACCACAGGTCTGACCATTACTCCGGCTACTGTCAGCGGGGAAATAGGCCAAATCGTTGAATTGCTGGCCACTGTTGCTCCTGTGAACGCAACATATCAAGGAGTGAACTGGTATTCTGGCGACCTGACGAAGGCGATCCATATCGGCGGTGGTAAATTCAAACTGCTTCAGTCTGGTTCTGTTACAGTTTATGGTGTTACTGTAGAAGGAAATCACACCGATTCCACCGTCATTACCGTCGCAGGGTTGTTGTCGTTGACAACCGATCTGGCTGCTTCTCAGGACGTGGCCGACGGCGCTGATGCGACATTCACTATCGTTGCTGCTGGCGGCACCGCGCCGTACTCTTATGTGTGGTATTACTCTGACACCCCTGGCGGCGAAGGTGTGGTGATTGATGCTGGTGTTAACCCAACAGCAGCGACTGCGTCTCTGGTCAACCACGCTGTCACCGCTGCTTCTGAGGGTGAGTACTGGTGTGTTGTAGAAGACGCGGACGGCCATTCTGTAACTTCCGCCCGTTGTGAACTGGCTGTGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c560534cc681508eb583493fa8038a02f2c42acd332a4d672ca17dbb60ca2653
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7268
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of two Salmonella enterica Typhimurium phages effective in limiting Salmonella in swine Zhang,J., Hong,Y., Harman,N.J., Singh,A. and Ebner,P.D. 2022-06-16 — GenBank