Protein

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Genbank accession
XCH42174.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDTGEHYSPNTNSIFHSDMPFVLVDGTYEATLGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQMLNFFEDQPRAGAELALTSAFAIGDSLAHGTYTYNGNLGHEESIARQGTGGTLLQSSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANADYWDPNWQAPIGSAGRGHDHFYVCSSNIRGFVGKKGEIPSNVNINYQSPSFPTKVYVCRGSTTNMAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGDDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYSGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTIKNLGNGNVELGVVIHAAEPAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64221,77800 Da
isoelectric point:6,59818
aromaticity:0,11973
hydropathy:-0,23963

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
XCH42174.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCH42174.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6471
Central domain 11 236 227 0,9435
C-terminal 237 593 356 0,8140
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-236
C-terminal
237-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PMBT22
[NCBI] 		3153513 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCH42174.1 [NCBI]
Genbank nucleotide accession
PP810245 [NCBI]
CDS location
range 110065 -> 111846
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATACTGGTGAGCACTATTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCCACTCTAGGGGATGCAGGTAATGGATACTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACCCATAGAGGATTCCTCAATGGTACTCAATCTCAGGTTGGTCAGATGCTAAACTTTTTTGAAGATCAACCACGTGCTGGAGCTGAGTTAGCTCTAACTTCTGCCTTTGCAATCGGTGATAGTCTAGCTCATGGTACTTATACATATAATGGTAATCTTGGTCATGAGGAATCTATTGCTCGGCAAGGAACTGGAGGTACTTTACTACAGTCTTCAGGTTTCCAGATCTATAGGCCTGGTGGTGTTTCTGCTGGTGAAGCCATTGCCAGAGCCTGGGCTCTTATTGGGTTTCCTTCAGGAGTTTCAGTACCTCCTCTAGACGCAGCAAATGCAGATTATTGGGATCCTAATTGGCAAGCACCTATTGGATCTGCTGGCAGAGGACATGATCATTTTTATGTATGTAGCTCTAATATACGTGGATTTGTAGGTAAAAAAGGGGAGATACCTTCTAATGTAAATATTAACTACCAATCCCCCTCCTTTCCTACTAAAGTATACGTTTGTAGGGGTTCTACAACTAATATGGCTGCGCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTTACTCCTACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAATATGGGAGTTTCTGGTAATCCATTTACTGGTTCAGATATCTTAATATCCCCATCTAACTTTACTATTAAAGGTGTTAGCCTACCAAATACAGGCTATAAATTTATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGTCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGATTGTGGTCTCCTGTTAACTATGGTGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGCGTAGGTAAACAATGGTATGTAGATACTAATACCAACTCCATTGGTAATGAACATGGGCCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGTAATGTTGTCAGTACTTATGTTGGGGATGACCTCAACCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAATTCTACTATCATATTAACTACCGAAGTTATTATGGGTAACATTAATACTGCGGGACAACGTGTTAGTACATACAGTGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGACGGTATATTTCACCAAATCCTTACCTTACCACCTGGCTATCTAGTACCATATCACAGTACAACTTCCTATAGCTATACCCAAACGTGGGCTAGTAGACCTGATGAGATGGCCTTTCGTAGGAATGGATATATTTATACTATTAAAAACCTTGGTAATGGTAATGTTGAGTTGGGTGTTGTCATTCATGCTGCAGAACCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4796a1859f4a868d6b48cb5f078eb19603aa7c163c74fc7141479f3b964fb75c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2573
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
This phage originates from the Bacteriophage catalogue of the Bacteriophage Competence Centre, Department of Microbiology und Biotechnology, Max Rubner-Institut, Kiel, Germany Sprotte,S. and Brinks,E. 2020-12-18 — GenBank