Protein

View in Explore
Genbank accession
AAB72130.2 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKAQHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEAAKRDIGTGANQIPDMSLFASINTVTAAAQKFPSGLVLQCGQLNGAPNVSSTYGMKFPMTFSRVIAVVVTLNVTGAAGQPTVSATNVQNTGFDITVSPGSGYGASADAYYIAMGY
Physico‐chemical
properties
protein length:216 AA
molecular weight: 22608,15930 Da
isoelectric point:5,33692
aromaticity:0,06944
hydropathy:-0,14306

Domains

Domains [InterPro]
DC_0512
STR
1–176
DC_0512
G3DSA:2.60.40.3940
RBD
127–216
G3DSA:2.60.40.3940
IPR054075
RBD
132–216
IPR054075
IPR037221
RBD
144–214
IPR037221
AAB72130.2
1 216
Architecture
STR
RBD
STR 1-176 | RBD 177-216
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage SfV
[NCBI] 		55884 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAB72130.2 [NCBI]
Genbank nucleotide accession
U82619.2 [NCBI]
CDS location
range 16671 -> 17321
strand +
CDS
ATGCATCGTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACAGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAAGAACTCTGCAGCGTGGTGGAGGCATCCGGGGCCAGTCTGGAGAAGGCGCAGCACGACCAGCTGCTTACCGCGCTTCGTGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGCGGCAAAACGGGATATAGGGACAGGGGCAAATCAGATACCTGATATGAGTTTATTCGCGTCAATTAATACCGTAACGGCTGCTGCGCAAAAATTTCCGTCCGGATTAGTTTTACAGTGCGGTCAGTTGAATGGTGCCCCGAATGTATCTTCAACATACGGGATGAAGTTCCCGATGACGTTCTCAAGAGTCATTGCTGTCGTAGTTACATTAAACGTTACTGGCGCGGCAGGGCAGCCGACTGTATCGGCGACAAATGTCCAGAACACTGGATTTGATATTACTGTGTCGCCTGGTTCAGGATACGGCGCATCTGCTGATGCGTATTACATTGCAATGGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb812772da3054b9c266339664e8e2a1ad162bd340e0902eb0ad074774890861
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8322
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Shigella flexneri type-specific antigen V: cloning, sequencing and characterization of the glucosyl transferase gene of temperate bacteriophage SfV Huan,P.T., Whittle,B.L., Bastin,D.A., Lindberg,A.A. and Verma,N.K. 1997 9305766 GenBank
Molecular characterization of the genes involved in O-antigen modification, attachment, integration and excision in Shigella flexneri bacteriophage SfV Huan,P.T., Bastin,D.A., Whittle,B.L., Lindberg,A.A. and Verma,N.K. 1997 9305767 GenBank
Complete genomic sequence of SfV, a serotype-converting temperate bacteriophage of Shigella flexneri Allison,G.E., Angeles,D., Tran-Dinh,N. and Verma,N.K. 2002 11889106 GenBank