Protein

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Genbank accession
XCO12116.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MALPNGSQIFIEQTRAATEIEATAVSNAENPVATVASTTGIVKGDYVLVLESVWAAFKNRVMRVKEVVSDTSITLEGDKNTSTADLNKFPAGGASTFVKIESWIEIPCVSDIAKSGGEQQFYTKQCLSDDREKQIPTFKSATSIAYTFDFDYSNPITQLLIGYDEDGKTRAMRMFVPKASYPIRTFSGTPSFDDIPNTVMNEDETTVLTISLDGKYTHMKEFVA
Physico‐chemical
properties
protein length:224 AA
molecular weight: 24618,42970 Da
isoelectric point:4,71158
aromaticity:0,09375
hydropathy:-0,21607

Domains

Domains [InterPro]
DC_0037
ATT
1–51
DC_0037 IPR014918
XCO12116.1
1 224
Architecture
ATT
TAS
ATT 1-51 | TAS 52-219 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO12116.1
1 224
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,5238
Central domain 219 218 1 0,2314
C-terminal 219 224 5 0,9311
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-218
C-terminal
219-224

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage GaoY1-9D
[NCBI] 		3233534 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO12116.1 [NCBI]
Genbank nucleotide accession
PP971806 [NCBI]
CDS location
range 13865 -> 14539
strand +
CDS
ATGGCACTTCCTAACGGTTCCCAAATCTTTATTGAGCAGACCCGAGCAGCCACCGAAATCGAAGCAACCGCAGTGAGTAACGCGGAAAATCCGGTGGCGACTGTTGCGTCAACCACTGGCATTGTGAAAGGCGATTACGTCCTGGTGCTGGAAAGCGTATGGGCTGCATTTAAAAACCGCGTAATGCGCGTAAAAGAAGTGGTTAGCGACACATCAATCACGCTTGAAGGCGACAAGAACACTTCCACGGCTGACCTTAACAAGTTCCCCGCTGGCGGCGCCTCCACCTTCGTTAAGATCGAAAGCTGGATTGAGATTCCATGCGTGAGCGACATCGCAAAATCTGGTGGCGAGCAGCAGTTCTATACCAAGCAGTGTCTTTCAGATGACCGTGAAAAGCAGATCCCGACCTTTAAATCTGCGACGTCCATCGCGTATACGTTCGACTTCGACTACTCCAACCCAATCACACAGCTTCTGATTGGTTACGACGAAGACGGCAAGACGCGCGCTATGCGAATGTTTGTACCGAAGGCAAGCTATCCGATCCGAACCTTCTCTGGCACGCCATCTTTCGATGACATCCCTAACACGGTGATGAACGAAGATGAAACGACCGTCCTGACCATCTCGCTTGATGGCAAATATACTCACATGAAAGAGTTTGTTGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
24704577087956dbf22d7f1bb9454ea2f7f21f635381c4af7fddc41f0b8aef2d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9074
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome sequence analysis of a novel Escherichia phage GaoY1-9D Zeng,X., Gao,R. and Fan,X. 2024 — GenBank