Protein

View in Explore
Genbank accession
YP_004324872.1 [GenBank]
Protein name
sericin 1 precursor-like protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MSQLNVDALKHSQGTGPGIDLQSSGNFAFDTNTLYVDSVNDRVGINDATPSHSLDVAGSDGVNLGCGAIFEKVNIVSGTSNGNTNIDLLTSSVHLFTSNNTGNWTPNFRGDASTSLDSIMSTGQVIVATIISDNGGSSGYAANMNIDGSGQTEYWSNDATPDDRGGTSGYDVYQYSIIKTGAGNSYLVLANRTYMD
Physico‐chemical
properties
protein length:196 AA
molecular weight: 20472,83750 Da
isoelectric point:4,14751
aromaticity:0,07653
hydropathy:-0,31224

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324872.1
1 196
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1931
Central domain 11 185 176 0,0225
C-terminal 186 196 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-185
C-terminal
186-196

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM7
[NCBI] 		445688 Uroviricota > Caudoviricetes > Pantevenvirales > Palaemonvirus > Palaemonvirus pssm7
Host Prochlorococcus marinus str. NATL1A
[NCBI] 		167555 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324872.1 [NCBI]
Genbank nucleotide accession
NC_015290 [NCBI]
CDS location
range 31952 -> 32542
strand +
CDS
ATGTCTCAATTAAATGTAGATGCACTAAAACACTCTCAAGGTACTGGACCTGGTATTGATCTACAGAGTAGTGGTAATTTTGCATTTGACACGAATACATTATATGTCGATTCTGTTAATGATAGAGTCGGAATTAATGATGCAACACCAAGTCATTCTTTAGATGTTGCTGGTAGTGATGGAGTTAATCTTGGTTGTGGTGCTATATTTGAAAAGGTAAATATTGTTTCGGGAACATCTAACGGTAATACTAATATTGACCTATTAACCTCGTCAGTTCATTTATTTACTTCTAATAATACTGGTAACTGGACTCCCAACTTTAGAGGAGATGCAAGTACCAGTTTAGATAGTATAATGTCTACTGGTCAGGTTATTGTTGCAACTATTATTTCTGATAATGGTGGAAGTAGTGGTTATGCAGCGAATATGAATATTGATGGTAGTGGACAAACTGAGTATTGGTCAAATGATGCCACTCCTGACGATAGAGGTGGTACATCTGGATATGATGTATATCAATACAGCATAATTAAAACTGGTGCTGGTAACAGTTACCTAGTTTTAGCAAATAGAACCTATATGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c63fc617e31a5293b8a70a092a6b1ada0d31f77c53717a23b81aaa3c9cd0c23f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7708
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage NATL1A-15 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank