Protein

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Genbank accession
YP_009103321.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANETKYFKTPFAESGTRTEVPNASVGGAVGFDTGFGSDYELPQGSAGRKRIERDKYNGLHHSITKNLKQWQEKLYPTWIEDAGSVTPFSYAIGMVVNHAGNNWISTDDANTDEPGVGLKWKAYNQVSDFDSVDDMLDFGDLAVGERYCTGGTTWKYNGFLLGNIADFEPISYVLADDFGAVGDGLTDSTVSLNAALSTGHVDVRVKSGGVYITKGAILYTRQHQYFNLQGSTLKLIDYINDAGRNVVIEQESYSGVINGIIDGNYQNNNFDMSTWVNPSTGRIDINETPTAWGVYMSRYATNGNVLLQSDRASVKNIKIVNTIRSNLVTSGVHPQVDNVETVNSLCDHLVYMSNSYSPTIGSLILRGFCVGEAIAVSTVGEGLDVHIDHITMKAVYISPWQTQSSFALDKYDPKWMHVRANSGGFLEQTSVTVGTFDIDDEDSLNLFDSNRGLLFYDCNVQIDTLNIKTKAQAISTVSGNMNFILAFGGGTVVNISNMIFKIDDATAYPSFVSLVNPRSDATVNIGSLFCRVSAPNYSDFKYLNSNNANITVNTLNTTQGAGTLAYINSTDITKDSSISINKIVKATGATKYFDAVVPIENTGITMFSVFSSGSLRYNSLSIWSPSNHPSAFNKNLIDTGTSSGGIQYVKDGYPSQELLIKWGGIASKVIAGSSPKIQWISAETPVAGSYSTLRLNDDGVDWVEIYKR
Physico‐chemical
properties
protein length:709 AA
molecular weight: 77219,11570 Da
isoelectric point:4,99356
aromaticity:0,10296
hydropathy:-0,19915

Domains

Domains [InterPro]
DC_0930
STR
1–694
DC_0930
IPR012334
STR
166–368
IPR012334
YP_009103321.1
1 709
Architecture
STR
STR 1-694 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009103321.1
1 709
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,9925
Central domain 191 611 422 0,9846
C-terminal 612 709 97 0,9775
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-611
C-terminal
612-709

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella sp. phage 1/41
[NCBI] 		1458861 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp.
[NCBI] 		50422 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales
Host Shewanella sp. 41
[NCBI] 		1386774 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009103321.1 [NCBI]
Genbank nucleotide accession
NC_025458.1 [NCBI]
CDS location
range 35254 -> 37383
strand +
CDS
ATGGCTAACGAAACAAAATATTTTAAAACACCTTTTGCTGAAAGTGGCACTAGAACGGAAGTTCCAAACGCAAGCGTTGGCGGCGCGGTTGGGTTTGATACTGGCTTTGGCTCTGACTATGAACTACCACAAGGTAGCGCTGGTCGTAAGCGCATAGAGCGCGATAAGTACAACGGCTTGCACCACAGCATTACTAAAAATTTAAAGCAGTGGCAGGAAAAACTTTATCCGACTTGGATTGAAGATGCAGGAAGTGTAACTCCATTCTCATATGCTATTGGTATGGTAGTTAATCACGCAGGAAATAATTGGATTTCGACTGATGATGCAAACACAGATGAGCCTGGCGTTGGTTTAAAATGGAAAGCCTACAATCAAGTTAGCGACTTTGATAGCGTGGATGACATGCTAGACTTTGGAGATTTAGCGGTTGGTGAACGCTATTGTACTGGCGGAACTACTTGGAAGTACAACGGGTTTTTATTAGGGAATATTGCAGACTTTGAACCAATTTCATATGTGCTTGCTGATGATTTTGGCGCTGTTGGTGACGGGCTAACTGACTCAACAGTCTCGTTAAATGCTGCACTTAGTACAGGGCATGTTGACGTACGAGTAAAAAGTGGTGGGGTATATATAACTAAAGGAGCGATACTATACACGCGACAGCATCAATATTTTAACTTACAAGGAAGTACCCTAAAGCTCATAGATTATATTAATGATGCTGGCCGAAATGTTGTAATTGAACAAGAGTCGTACAGTGGAGTAATCAACGGAATTATTGATGGAAATTATCAGAACAATAACTTTGATATGTCAACCTGGGTTAATCCTAGTACCGGAAGAATTGACATAAACGAAACGCCTACAGCATGGGGCGTTTACATGAGCAGATACGCAACTAATGGAAACGTACTGTTGCAGAGCGATAGAGCTAGCGTAAAGAACATAAAGATAGTAAACACTATCCGAAGCAATCTAGTTACATCTGGAGTTCATCCTCAGGTTGACAATGTTGAAACAGTAAACTCGCTATGTGACCATCTAGTTTATATGTCAAACTCGTATAGTCCAACTATTGGCAGCCTAATTTTGAGAGGCTTCTGCGTAGGTGAAGCTATTGCTGTTTCAACCGTTGGCGAAGGATTGGATGTCCATATAGATCATATAACGATGAAAGCTGTTTATATATCACCATGGCAAACTCAGTCGTCATTTGCGCTTGACAAATACGACCCTAAGTGGATGCACGTAAGGGCCAACTCTGGTGGCTTCTTAGAGCAAACATCAGTTACAGTCGGCACGTTTGACATAGATGATGAAGATTCATTGAACCTTTTTGATAGCAATAGGGGACTACTATTCTATGATTGCAACGTTCAAATAGATACGTTAAATATAAAAACCAAAGCGCAGGCGATTAGCACTGTTTCTGGTAATATGAATTTTATCTTAGCGTTTGGAGGTGGAACTGTTGTTAATATTTCTAATATGATTTTCAAGATAGATGACGCGACCGCTTACCCTAGCTTTGTTTCATTAGTTAATCCAAGATCGGATGCCACAGTAAATATAGGATCTCTTTTCTGTCGGGTTTCAGCTCCAAATTATAGTGACTTTAAATACTTGAATTCTAACAATGCCAACATAACAGTTAATACATTGAACACTACTCAGGGCGCCGGAACGCTTGCTTATATCAATAGCACTGATATAACAAAGGACTCATCAATATCTATAAATAAAATAGTAAAGGCAACTGGCGCTACTAAGTATTTTGATGCAGTAGTACCAATTGAAAACACAGGGATTACTATGTTTAGTGTTTTCAGCTCTGGATCGCTACGCTATAACTCGCTATCAATCTGGTCACCGTCTAATCATCCAAGCGCATTTAATAAGAATTTGATCGACACAGGAACCTCTAGCGGCGGCATTCAGTATGTAAAAGATGGATACCCATCGCAGGAATTACTCATTAAGTGGGGCGGGATAGCTTCAAAAGTAATTGCTGGTTCCAGCCCTAAAATACAATGGATATCAGCAGAAACTCCAGTAGCTGGTAGCTATTCAACTTTAAGGCTAAACGATGATGGGGTTGACTGGGTTGAAATTTATAAGCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
81af1deb08e6d1d9fe0a1589c406ed72c419e486d32280e6821b2a0bba3c8324
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7216
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50