Protein

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Genbank accession
QVJ07751.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPLMKLIEFAEKGLNSDIAPSLLDGNFVTYARNIRVKDGAIIPMGGHIELTELPANSNVGFIHYVPHNGAPYLILLGTDKIYHFDGTFIEVQPTPFVGASNPDLWSVSMLGQIPIITHPSTGPMFYNQSTGKYQSLPWDKAQDWNDASQTAKVVRAHKQFLIAMDVTDAGQEHPDAIRWSSPADIGSVPETWDPTDTTNFAGYTTLGGDGGYIIDGLSLRDSFVIYRQRSITILDYVRGSYVWKIRHMTESAGLLSKDCIAEANGVHYFIGDGDVYRNDGTNVRSIMHKRVKTSFATSIDKDNYHRSFARHNIAKSEIWFCVPQTGSSRPDIAYIYNYVDDTWAIRDLPNCLNATYGAPPAKSSVWDYIDSSWDDISRSWNDETQTPYSDSLITVIPSDDGTTGKIAILDTPIDSTSVPFSTIIERTDLAINGVNSVTTIKRIYPYITGVAKVMIQIGSQSRPGGPTSWKRAVEFDPNRDRKVDVRSTGELHCFRIYSDDVHAHFAFSGMDVEFIEAGER
Physico‐chemical
properties
protein length:520 AA
molecular weight: 57881,17060 Da
isoelectric point:5,29708
aromaticity:0,10577
hydropathy:-0,30288

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVJ07751.1
1 520
Domain Start End Length (AA) Confidence
N-terminal 1 400 400 0,6355
Central domain 401 509 110 0,1091
C-terminal 510 520 10 0,9978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-400
Central
401-509
C-terminal
510-520

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValP_VA-RY-3
[NCBI] 		2831177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVJ07751.1 [NCBI]
Genbank nucleotide accession
MW900438 [NCBI]
CDS location
range 31909 -> 33471
strand -
CDS
ATGCCTTTGATGAAGCTTATTGAATTTGCCGAGAAAGGATTGAACTCTGATATAGCACCTTCCCTTCTCGACGGCAACTTTGTAACGTACGCCAGAAATATAAGAGTGAAGGATGGTGCTATAATTCCAATGGGTGGCCATATAGAGCTTACTGAATTGCCAGCAAATTCTAACGTAGGCTTCATCCATTATGTGCCTCACAATGGCGCTCCTTACCTTATACTTTTGGGCACAGATAAGATTTACCACTTTGATGGAACGTTTATAGAAGTTCAACCTACACCATTCGTCGGTGCTTCAAACCCCGACTTATGGTCTGTGTCTATGCTAGGTCAAATCCCTATCATAACGCACCCTAGTACCGGCCCAATGTTCTACAATCAATCTACTGGCAAGTATCAATCCCTGCCTTGGGATAAGGCGCAGGATTGGAATGACGCTAGTCAAACTGCCAAAGTGGTGAGGGCGCATAAGCAGTTCCTTATAGCTATGGATGTTACTGATGCTGGTCAAGAGCATCCTGATGCCATCCGTTGGTCTAGTCCTGCTGATATAGGGAGCGTTCCTGAAACGTGGGATCCAACTGATACGACCAACTTCGCAGGATACACTACATTAGGCGGAGACGGTGGTTATATCATAGATGGCCTTTCACTTAGAGATTCATTTGTCATATACAGACAGAGAAGCATAACAATTCTCGACTACGTTCGAGGCAGTTATGTCTGGAAGATTAGGCATATGACTGAATCGGCAGGACTATTGTCAAAAGATTGTATAGCGGAAGCAAATGGAGTTCACTACTTCATAGGTGACGGTGACGTATATAGAAACGACGGAACCAATGTTCGCTCTATTATGCACAAGCGAGTCAAGACGTCATTTGCCACAAGCATAGACAAAGACAATTACCATCGCTCTTTTGCTAGGCACAATATAGCTAAGTCCGAGATTTGGTTCTGCGTTCCACAGACTGGCTCTAGTCGTCCAGATATAGCCTACATATATAATTACGTAGATGACACTTGGGCTATAAGAGATTTGCCTAATTGCTTAAATGCTACGTATGGTGCGCCTCCTGCTAAGTCTTCAGTATGGGACTATATAGACTCAAGCTGGGATGATATTAGCAGGTCTTGGAATGACGAGACTCAAACTCCTTATAGCGACTCACTTATCACCGTAATACCTTCTGATGATGGGACAACGGGTAAAATAGCTATATTAGATACCCCTATCGACTCGACCTCTGTACCTTTTTCTACTATAATAGAAAGGACGGATTTAGCCATCAACGGGGTGAACTCAGTTACTACTATTAAAAGAATCTACCCTTACATTACAGGTGTAGCAAAGGTTATGATTCAAATAGGCAGTCAGTCTAGACCAGGTGGCCCAACCTCTTGGAAAAGAGCGGTTGAGTTTGACCCCAATAGAGATAGGAAGGTTGATGTGCGCTCGACTGGTGAGTTGCACTGCTTTCGTATTTACTCTGATGACGTTCACGCTCATTTCGCTTTCTCGGGCATGGATGTCGAATTCATAGAGGCAGGTGAACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
324bbe6e640eb6f3649def21ee995d1a07b611e8f801da3117381372efeff7c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8971
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence analysis of Vibrio alginolyticus lytic phage vB_ValP_VA-RY-3 Ren,Y., Xu,Y. and Wang,L. 2021-04-02 — GenBank