Protein

View in Explore
Genbank accession
UYA98981.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MANHFRLYERPLMADETEAALTVTGVLEGYTSGEAYESRLQINNSIGRCTVEIVEANLPPGAAVRVDNVTKEVVVKWDAFEVVAEELNAVPNGDFEEGDNGQWSFGNGWSIEAGGAETGTFSGVFQNFKGISSIESVRLPYTPGTPIKGQCRFQQGASSKGNLVGRALLIWCDANGNMLPGGEGVSFTGGDLIRSGSNGEWKTSTVTGASREATMVAIGFNCNRKKQNKLARVDNFTWNHKYTLGQVGDDVYFLHIKVTDSLNRVAYWKGNIEEYGVFLTSQLYPFYVVEELQTAPSYTEWRDRSSPNQLEAVVSTPSFVEFGFKSVRRDYDAGAESVMTTPSFVSMELRTIRRDYDAGYESVLTTPSLVSFNIKEHPKPPTEVDSVLTTPSFVSMELRTIRRDYDAGYESVLTTPSLVSFNIKEHPKPPTEVDSVLTTPSFVSWSTS
Physico‐chemical
properties
protein length:448 AA
molecular weight: 49414,51600 Da
isoelectric point:4,92563
aromaticity:0,10491
hydropathy:-0,32946

Domains

Domains [InterPro]
DC_0281
ATT
1–87
DC_0281 DC_0398
G3DSA:2.60.120.260
STR
86–238
G3DSA:2.60.120.260 DC_0398
UYA98981.1
1 448
Architecture
ATT
STR
RBD
ATT 1-87 | STR 88-238 | RBD 240-448
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYA98981.1
1 448
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,3734
Central domain 233 437 206 0,2206
C-terminal 438 448 10 0,0494
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-437
C-terminal
438-448

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_Xar_IVIA-DoCa9
[NCBI] 		2975536 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYA98981.1 [NCBI]
Genbank nucleotide accession
ON932083.1 [NCBI]
CDS location
range 39908 -> 41254
strand +
CDS
ATGGCTAACCACTTCCGCCTCTACGAGCGCCCGCTGATGGCGGACGAGACCGAGGCAGCACTGACTGTTACTGGCGTGCTGGAGGGATACACCTCCGGCGAGGCTTACGAGAGTCGGTTGCAGATCAACAACAGCATCGGCCGCTGCACCGTGGAGATTGTCGAAGCGAACCTCCCGCCCGGTGCGGCGGTGCGCGTGGACAACGTGACGAAGGAAGTGGTGGTCAAGTGGGATGCCTTCGAGGTTGTCGCCGAAGAACTCAACGCGGTTCCCAACGGGGACTTCGAGGAGGGCGACAACGGGCAGTGGTCCTTCGGCAACGGCTGGTCCATCGAAGCAGGAGGTGCCGAGACTGGCACCTTCTCCGGCGTGTTCCAGAACTTCAAGGGCATTTCGTCTATCGAGTCCGTACGCCTTCCATACACCCCCGGCACCCCGATCAAGGGCCAGTGCCGGTTCCAGCAGGGCGCGTCGTCGAAGGGCAACCTCGTCGGACGCGCGCTTCTGATTTGGTGCGACGCCAACGGCAACATGTTGCCCGGGGGTGAGGGCGTGTCCTTCACTGGTGGCGACCTGATCCGCTCTGGCAGCAATGGCGAGTGGAAGACTTCCACGGTCACTGGCGCAAGCCGAGAGGCCACGATGGTGGCAATCGGATTCAACTGCAATCGGAAGAAGCAGAACAAGCTCGCGCGCGTGGACAACTTCACTTGGAACCACAAGTATACCTTGGGCCAAGTTGGTGACGACGTGTACTTCCTGCACATCAAAGTAACGGACTCGTTGAACCGTGTCGCGTACTGGAAGGGCAACATCGAGGAGTACGGGGTGTTCTTGACCTCGCAGCTCTACCCGTTCTATGTGGTGGAGGAACTTCAGACTGCTCCGAGTTATACCGAGTGGCGGGATCGCAGCAGCCCGAATCAGCTGGAGGCGGTTGTCTCTACGCCCAGCTTCGTGGAGTTTGGGTTCAAGAGTGTCCGACGAGACTACGATGCGGGTGCTGAGTCCGTTATGACCACTCCTTCCTTCGTCTCGATGGAGCTTCGTACCATCCGCCGCGATTACGACGCAGGCTACGAGTCCGTGCTGACCACGCCGTCCCTTGTTTCCTTCAACATCAAGGAGCACCCGAAGCCGCCCACCGAGGTGGATAGTGTGCTGACCACTCCTTCCTTCGTCTCGATGGAGCTTCGTACCATCCGCCGCGATTACGACGCAGGCTACGAGTCCGTGCTGACCACGCCGTCCCTTGTTTCCTTCAACATCAAGGAGCACCCGAAGCCGCCCACCGAGGTGGATAGTGTGCTGACCACTCCTTCCTTCGTCTCTTGGAGCACTTCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1cf1058bf34f7c4a69371feb946be145466fdd64e4f291ee91cf4930bfed6880
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6184
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of new lytic phages for the biological control of phytopathogenic Xanthomonas spp. Domingo-Calap,M.L., Bernabeu-Gimeno,M., Aure,C.M., Marco-Noales,E. and Domingo-Calap,P. 2022-12-21 — GenBank